Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0199
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             148   3e-36
SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)                    30   1.9  
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_55324| Best HMM Match : zf-CCHC (HMM E-Value=0.00014)               29   4.5  
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_42110| Best HMM Match : Pox_A32 (HMM E-Value=0.034)                 29   4.5  
SB_30355| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  148 bits (359), Expect = 3e-36
 Identities = 92/185 (49%), Positives = 109/185 (58%), Gaps = 3/185 (1%)
 Frame = +3

Query: 93  VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLPSRRRT 272
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELL    + 
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 273 PRDCSKVMPFYVVWFVLEYWMKNR*NSIMCLV*RLRTSWSVVCRRRCSKLA-AKSIHHAR 449
           PR   +          +    ++R      L  R+        + +  KL  AKSIHHAR
Sbjct: 65  PRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHAR 124

Query: 450 ILIRQRHIRVRKQVVNIPSLLXAWTLQAH*LLS-ESPFXGGRLD-VSRGRTSAGTXWXSR 623
           +LIRQRHIRVRKQ+VN+PS +     Q H   S  SP+ GGR   V R     G      
Sbjct: 125 VLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMKKGQGGSGG 184

Query: 624 HDEEK 638
            DE++
Sbjct: 185 EDEDE 189



 Score =  107 bits (257), Expect = 8e-24
 Identities = 63/119 (52%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
 Frame = +2

Query: 257 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGC--E 430
           LEEKDP+RLFEGNALLRRLVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK G    
Sbjct: 60  LEEKDPRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKS 119

Query: 431 VHPSCQNFDPAKAYSCPQASCEHPIIIXRLDSAXXXXXXXXXXXWRS-XGRVKRKNLRR 604
           +H   +     +     +     P  + RLDS                 GRVKRKN+++
Sbjct: 120 IH-HARVLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMKK 177


>SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)
          Length = 499

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = -2

Query: 383 SPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPSPRGEELTSSLTDTSERV 213
           SP+ +D  H  VSSV    LQ   DD   H L+  ++ PS   +  T  +T  +ER+
Sbjct: 219 SPEVADFFHELVSSVSDISLQLHKDDTT-HMLKDFAFHPSESNK--TEFITKATERL 272


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +3

Query: 120 RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLPSRRRTPRDCSKVMP 299
           +RP  K  L Q+   +G+YG   KR+   V         AARE+L      P+  S V+ 
Sbjct: 57  KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPKFDSPVLE 116

Query: 300 F 302
           +
Sbjct: 117 Y 117


>SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = -2

Query: 332 PVLQYEPDDVEGHYLRTISWGPSPRGEELTSSLTDTSERVFDAPYFTLVAETVLSDDLQL 153
           P + +    VE H    +    SP    L ++  DT+ R++    F+L  +T LSD  Q 
Sbjct: 185 PTMLHPKTKVEAHKRYALKCQFSPDSCLLATTSADTTVRIWQTADFSL--KTTLSDTSQR 242

Query: 152 LVKTCLFKRTTR 117
            V  C F   ++
Sbjct: 243 WVWDCAFSEDSQ 254


>SB_55324| Best HMM Match : zf-CCHC (HMM E-Value=0.00014)
          Length = 344

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 395 RLQTQVFKAGCEVHPSCQNFDPAKAYSCPQASCE 496
           ++  +VF  G  +HPS +  D A+   CP A  E
Sbjct: 120 KILREVFGVGLTIHPSDREADGARVRPCPDAPDE 153


>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
 Frame = -2

Query: 458 DQNSGMMDGLRSQL*TPASADDAPRSPQSSDQAHNRV--SSVFHP-VLQYEPDDVEGHYL 288
           D    M   +  +  TP+     P+S QSS  +H+    S + HP +L  E    E  +L
Sbjct: 274 DSEGAMPRSILRRQNTPSDDSTPPKSRQSSQSSHSSKGDSDMPHPQILTRE----EAEFL 329

Query: 287 RTISWGPSPRGEELTSSLTDTSERVFDAPYFTLVAETVLSDDLQLLVKT 141
           +  +   +PR   L S   D  ER  D P FT     +LS+  +LL ++
Sbjct: 330 QAFTDEMTPR--ILKSRSFD--ERTMDRPPFTGPGIQILSNKHRLLPRS 374


>SB_42110| Best HMM Match : Pox_A32 (HMM E-Value=0.034)
          Length = 720

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/61 (27%), Positives = 35/61 (57%)
 Frame = -2

Query: 404 SADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPSPRGEELTSSLTDT 225
           +AD   RS  S+ ++  R+S+V H V ++    V   ++RT+S   + +  ++T ++TD 
Sbjct: 608 TADQGARSGDSASRS--RISAVIHEVSRHLDTRVHSTHIRTMS---TTQQSKITKTITDA 662

Query: 224 S 222
           +
Sbjct: 663 A 663


>SB_30355| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 444 HDGWTSQPALNTCVCRRRSKKSSI 373
           ++GW + P L  C C R   +SSI
Sbjct: 599 NEGWITTPELKACKCARHGDESSI 622


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = -2

Query: 467 PLPDQNSGMMDGLRSQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYL 288
           P+P QN G +  L+SQ  T         S +    + + V     P L+  P D      
Sbjct: 666 PVP-QNRGPVPALQSQEHTTEHMRSDIASDEGGTSSMSSVDIRERPPLKMPPQDAVDGRT 724

Query: 287 RTISWGPSPRGEELTSSLTD 228
              S+    RG+EL +SL +
Sbjct: 725 EEPSYASRGRGQELMTSLQE 744


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,453,164
Number of Sequences: 59808
Number of extensions: 390788
Number of successful extensions: 1199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)