Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0194
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32)                     28   7.8  
SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013)              28   7.8  

>SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32)
          Length = 1077

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 143 IQTAHFICDPFMILKFIFQC*TQQLIFRPYGFL 45
           I  AHF  D F IL F+FQ  T +++F   G L
Sbjct: 549 ILAAHFSTDRFTILAFVFQV-TYEIVFCKGGSL 580


>SB_11042| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00013)
          Length = 499

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 121 QIKCAVCITVYCKLPRSCLSDV*AANTNEIDAVNVPAIDKESIITRRC 264
           QI C+ CIT + +   +C S       ++ID +  P ++  S++  +C
Sbjct: 349 QIFCSGCITAWLRNAGACSSCRSVLEVSDIDPLKGPLLNIYSLVKIKC 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,078,261
Number of Sequences: 59808
Number of extensions: 318508
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)