Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0183
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 186 2e-47
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 186 2e-47
SB_56| Best HMM Match : Actin (HMM E-Value=0) 186 2e-47
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 186 2e-47
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 186 2e-47
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 4e-21
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 6e-19
SB_54| Best HMM Match : Actin (HMM E-Value=0) 71 8e-13
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 60 2e-09
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 57 1e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 55 4e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 7e-07
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.051
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.089
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.63
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 28 7.7
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) 28 7.7
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 186 bits (452), Expect = 2e-47
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 255 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 434
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 435 APLNPKANREKMTQIMFETFNTPA 506
APLNPKANREKMTQIMFETFN+PA
Sbjct: 109 APLNPKANREKMTQIMFETFNSPA 132
Score = 100 bits (239), Expect = 1e-21
Identities = 45/51 (88%), Positives = 49/51 (96%)
Frame = +1
Query: 112 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 264
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 186 bits (452), Expect = 2e-47
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 255 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 434
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 435 APLNPKANREKMTQIMFETFNTPA 506
APLNPKANREKMTQIMFETFN+PA
Sbjct: 108 APLNPKANREKMTQIMFETFNSPA 131
Score = 97.5 bits (232), Expect = 8e-21
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = +1
Query: 118 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 264
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 186 bits (452), Expect = 2e-47
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 255 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 434
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 435 APLNPKANREKMTQIMFETFNTPA 506
APLNPKANREKMTQIMFETFN+PA
Sbjct: 108 APLNPKANREKMTQIMFETFNSPA 131
Score = 98.7 bits (235), Expect = 4e-21
Identities = 44/49 (89%), Positives = 48/49 (97%)
Frame = +1
Query: 118 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 264
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 186 bits (452), Expect = 2e-47
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 255 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 434
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 435 APLNPKANREKMTQIMFETFNTPA 506
APLNPKANREKMTQIMFETFN+PA
Sbjct: 109 APLNPKANREKMTQIMFETFNSPA 132
Score = 104 bits (250), Expect = 6e-23
Identities = 46/51 (90%), Positives = 50/51 (98%)
Frame = +1
Query: 112 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 264
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 186 bits (452), Expect = 2e-47
Identities = 83/84 (98%), Positives = 84/84 (100%)
Frame = +3
Query: 255 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 434
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 435 APLNPKANREKMTQIMFETFNTPA 506
APLNPKANREKMTQIMFETFN+PA
Sbjct: 109 APLNPKANREKMTQIMFETFNSPA 132
Score = 100 bits (239), Expect = 1e-21
Identities = 43/51 (84%), Positives = 49/51 (96%)
Frame = +1
Query: 112 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 264
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 51
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 98.7 bits (235), Expect = 4e-21
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = +1
Query: 118 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMDRR 264
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM ++
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
Score = 89.4 bits (212), Expect = 2e-18
Identities = 40/43 (93%), Positives = 40/43 (93%)
Frame = +3
Query: 255 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 383
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 91.5 bits (217), Expect = 6e-19
Identities = 40/79 (50%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Frame = +3
Query: 261 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEA 437
KD VGDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE
Sbjct: 53 KDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEP 112
Query: 438 PLNPKANREKMTQIMFETF 494
PLNP NREKM ++MFE +
Sbjct: 113 PLNPMKNREKMIEVMFENY 131
Score = 44.4 bits (100), Expect = 8e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 130 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 228
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 70.9 bits (166), Expect = 8e-13
Identities = 31/47 (65%), Positives = 38/47 (80%)
Frame = +3
Query: 363 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 503
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVP 2175
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 136 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 237
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 121 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 237
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/62 (38%), Positives = 40/62 (64%)
Frame = +3
Query: 321 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 500
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 501 PA 506
PA
Sbjct: 63 PA 64
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 57.2 bits (132), Expect = 1e-08
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +3
Query: 411 EHPVLLTEAPLNPKANREKMTQIMFETFNTPA 506
+HPVLLTEAPLNP+ NREK ++ FETFN PA
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPA 157
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Frame = +3
Query: 264 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 428
D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 283 DFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +1
Query: 106 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 252
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -2
Query: 234 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 118
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 35.1 bits (77), Expect = 0.051
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +3
Query: 246 GRYGQKDS---YVGDEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 407
GR G+ DS VG++ S I L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 408 EEHPVLLTEAPLNPKANRE 464
HPV++TE NP R+
Sbjct: 165 VNHPVIMTEPVCNPNYCRQ 183
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.089
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 270 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 392
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 124 EVAALVVDNGSGMCKAGFAGDDAPRAV 204
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 209 GNTARGASSPAKPALHIPEPLSTT 138
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 209 GNTARGASSPAKPALHIPEPLSTT 138
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 209 GNTARGASSPAKPALHIPEPLSTT 138
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 209 GNTARGASSPAKPALHIPEPLSTT 138
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 209 GNTARGASSPAKPALHIPEPLSTT 138
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 130 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMD 258
+ +++D GS KAGFA ++A + + S++G H + + +D
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEHAFLSLKVD 524
>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
Length = 1977
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 401 RPRGTPSPAH*GSPQPQGQQREDDPDHVRNIQHARMRRHXTVLSLTRPVVHRYR 562
R +GTPS H + + DD + ++NI+ R T+ + P YR
Sbjct: 1034 RSQGTPSTKHNSPYKAPYESNSDDDEFIKNIR--RNMESITLRTTPSPAAEEYR 1085
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,386,781
Number of Sequences: 59808
Number of extensions: 496954
Number of successful extensions: 3230
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3225
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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