Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0174
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26105| Best HMM Match : Homeobox (HMM E-Value=1.1e-30)              29   2.6  
SB_26436| Best HMM Match : Somatomedin_B (HMM E-Value=3.7)             28   7.8  
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  
SB_58748| Best HMM Match : Somatomedin_B (HMM E-Value=3.7)             28   7.8  
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)                   28   7.8  
SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)           28   7.8  
SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_26105| Best HMM Match : Homeobox (HMM E-Value=1.1e-30)
          Length = 315

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 233 VLLLPNCTRRNHTRRPLKICGFSFCSFWLRH 325
           +LL  +CT +N  +R  + C  SF  FW RH
Sbjct: 88  LLLCRDCTHKNIKQRSRR-CALSFNGFWRRH 117


>SB_26436| Best HMM Match : Somatomedin_B (HMM E-Value=3.7)
          Length = 233

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 314 KNYRRRNHISSRVC-GCGSYGCNWAVIRPA 228
           K Y RRNH  + +C GCG   C+  ++ PA
Sbjct: 162 KGYDRRNHKCNNLCYGCGEQECS-PLVPPA 190


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 352  YLTLANSQTVPEPKTTEGETTYLQGSAG 269
            + T   S T+PEP TT+  TT+   +AG
Sbjct: 1715 FSTSDRSSTLPEPSTTDATTTHESVTAG 1742


>SB_58748| Best HMM Match : Somatomedin_B (HMM E-Value=3.7)
          Length = 246

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 314 KNYRRRNHISSRVC-GCGSYGCNWAVIRPA 228
           K Y RRNH  + +C GCG   C+  ++ PA
Sbjct: 168 KGYDRRNHKCNNLCYGCGEQECS-PLVPPA 196


>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
          Length = 1056

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 314 KNYRRRNHISSRVC-GCGSYGCNWAVIRPA 228
           K Y RRNH  + +C GCG   C+  ++ PA
Sbjct: 69  KRYDRRNHKCNNLCYGCGEQECS-PLVPPA 97


>SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)
          Length = 925

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 314 KNYRRRNHISSRVC-GCGSYGCNWAVIRPA 228
           K Y RRNH  + +C GCG   C+  ++ PA
Sbjct: 117 KGYDRRNHKCNNLCYGCGEQECS-PLVPPA 145


>SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 314 KNYRRRNHISSRVC-GCGSYGCNWAVIRPA 228
           K Y RRNH  + +C GCG   C+  ++ PA
Sbjct: 275 KGYDRRNHKCNNLCYGCGEQECS-PLVPPA 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,426,780
Number of Sequences: 59808
Number of extensions: 347990
Number of successful extensions: 855
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)