Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0158
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10197| Best HMM Match : Rho_N (HMM E-Value=1.8)                     29   1.9  
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)                   27   5.8  
SB_43219| Best HMM Match : zf-CCHC (HMM E-Value=0.0056)                27   5.8  
SB_21302| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-27)         27   5.8  
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)         27   5.8  
SB_19469| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00048)       27   5.8  
SB_10783| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_10197| Best HMM Match : Rho_N (HMM E-Value=1.8)
          Length = 335

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 281 GKSSFRRWDHVRGAFRARSRCPMTLPTTWK 370
           GK SFR+W     AF+A +R P  +P  W+
Sbjct: 205 GKKSFRQW---LDAFKAIARLPQGVPYQWR 231


>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
          Length = 557

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 253 ESKRKKCLIRQELFSEMGSRERSFQGTEPLPHDPTNDLEMVERKGKLTIT 402
           ES  K+   +QEL  +  + E+    T  + H  +N+     +  KLTIT
Sbjct: 476 ESHLKQLKYQQELLQQKATFEKDQNTTSSMDHSASNNSATNTKLPKLTIT 525


>SB_43219| Best HMM Match : zf-CCHC (HMM E-Value=0.0056)
          Length = 693

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 253 ESKRKKCLIRQELFSEMGSRERSFQGTEPLPHDPTNDLEMVERKGKLTIT 402
           ES  K+   +QEL  +  + E+    T  + H  +N+     +  KLTIT
Sbjct: 107 ESHLKQLKYQQELLQQKATFEKDQNTTSSMDHSASNNSATNTKLPKLTIT 156


>SB_21302| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-27)
          Length = 1290

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 253 ESKRKKCLIRQELFSEMGSRERSFQGTEPLPHDPTNDLEMVERKGKLTIT 402
           ES  K+   +QEL  +  + E+    T  + H  +N+     +  KLTIT
Sbjct: 63  ESHLKQLKYQQELLQQKATFEKDQNTTSSMDHSASNNSATNTKLPKLTIT 112


>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
          Length = 1769

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 253 ESKRKKCLIRQELFSEMGSRERSFQGTEPLPHDPTNDLEMVERKGKLTIT 402
           ES  K+   +QEL  +  + E+    T  + H  +N+     +  KLTIT
Sbjct: 712 ESHLKQLKYQQELLQQKATFEKDQNTTSSMDHSASNNSATNTKLPKLTIT 761


>SB_19469| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00048)
          Length = 1347

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 253 ESKRKKCLIRQELFSEMGSRERSFQGTEPLPHDPTNDLEMVERKGKLTIT 402
           ES  K+   +QEL  +  + E+    T  + H  +N+     +  KLTIT
Sbjct: 428 ESHLKQLKYQQELLQQKATFEKDQNTTSSMDHSASNNSATNTKLPKLTIT 477


>SB_10783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 399 YGQLTFSLDHFQVVGRVMGQRLRALKAPLT*SHLR 295
           Y Q  F +D +QV  R++G  + A K     SH+R
Sbjct: 91  YYQAFFDVDTYQVGHRILGSMVPAYKRNFLISHIR 125


>SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 253 ESKRKKCLIRQELFSEMGSRERSFQGTEPLPHDPTNDLEMVERKGKLTIT 402
           ES  K+   +QEL  +  + E+    T  + H  +N+     +  KLTIT
Sbjct: 52  ESHLKQLKYQQELLRQKATFEKDQNTTSSMDHSASNNSATNTKLPKLTIT 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,949,553
Number of Sequences: 59808
Number of extensions: 178967
Number of successful extensions: 407
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)