Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0155
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.71 
SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_54679| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)             27   6.6  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 155 SMVRFQS*SRLSSVCSPIVHQLSSRRDSRLCVSSSSPSAHL*GP 24
           S +  +S S  SSVC  ++H+LS+ R   +C S     A+   P
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSANRSKTVCRSIGHTGAYTGAP 473


>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 277 IDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 378
           +D  L NKG  PH    N    ++E DPK H LF+
Sbjct: 349 LDYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 369 SVLRVFLVVAFHIIPGCLVRAVAFVGQASVNQLLYFQFASA 247
           SVL VF+V+   +IPG  V A  +V     N +  + FA +
Sbjct: 26  SVLLVFMVLLIVMIPGTWVAAAIYVKHFQDNVIWEYVFAGS 66


>SB_54679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
 Frame = -2

Query: 396 GWIMCLQEKSVLRVFLVVAFHIIPGCLVRAVAFVGQASVNQLLYFQFASA-LGTLARATS 220
           GW++C    +   +F V   HI  G +   +       V++  + +  SA +G++A + +
Sbjct: 25  GWVVCAA--AFFAMFTVFGIHISYGVIYANL-------VDEHGFGEAESAWIGSVAGSLN 75

Query: 219 FLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVS 82
           FL  P     CD        F  G  SVL   + S   N    +V+
Sbjct: 76  FLCGPVASFLCDRYGCRSVAFIGGILSVLGLFLTSFVQNPGKMYVT 121


>SB_16848| Best HMM Match : Ion_trans_2 (HMM E-Value=0.083)
          Length = 283

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 268 EKLIDACLANKGNSPHQTAWNYVKCYHEKDPKHALFL*TH 387
           +K++D  L ++      TA +YV+ YHE   KH+L   +H
Sbjct: 197 KKIVDGILIDR-----YTAGSYVRHYHENKLKHSLISASH 231


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 112  QTEDRRL*D*KRTIEEVCSMYADQITADDQGREIQ 216
            Q+  R L D   T+ ++   + DQ+ ADD  RE++
Sbjct: 1018 QSTGRGLLDGSSTLRQIDKFFRDQLKADDVERELR 1052


>SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 889

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 131 SRLSSVCSPIVHQLSSRRDSRLCVSSSSPSAHL*GPEP 18
           SR S    P++ Q +SRRD+R CV +      +  P P
Sbjct: 418 SRRSFESLPLLQQPTSRRDARACVRAEDAFGIVHTPVP 455


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,931,711
Number of Sequences: 59808
Number of extensions: 248243
Number of successful extensions: 740
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)