Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0131
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58297| Best HMM Match : DUF630 (HMM E-Value=6.3)                    31   0.80 
SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   7.5  

>SB_58297| Best HMM Match : DUF630 (HMM E-Value=6.3)
          Length = 194

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -2

Query: 638 DHFLWESX--PLHYVTRYGTRLFGFFFAHAYDSGYLRTYVAPNCSLPFSI-YVTIFL 477
           +H LW +    +HY+TRY TR +G  +   Y + Y+  YV   C   + I YVT ++
Sbjct: 130 NHELWNNDVGQVHYMTRYVTR-YGSHYVTRYFTRYVSRYVT-RCVTRYVIPYVTRYV 184


>SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 421

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 92  VSSPTSSVNLE*PLEVTRIDVFPVASVKTT 181
           +SSPT  V ++  +E  R+  +P++SV+ T
Sbjct: 148 ISSPTDLVKVQMQMEGRRLSFYPISSVRGT 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,017,376
Number of Sequences: 59808
Number of extensions: 267482
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)