Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0128
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)          54   8e-08
SB_25857| Best HMM Match : NAD_binding_1 (HMM E-Value=1.9e-07)         46   2e-05
SB_29712| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_25455| Best HMM Match : DUF948 (HMM E-Value=0.11)                   28   8.0  
SB_18749| Best HMM Match : Homeobox (HMM E-Value=6.1e-28)              28   8.0  

>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
          Length = 724

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 8/81 (9%)
 Frame = +1

Query: 34  MHLFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKI------YVQHKIFENR 192
           M LFFGCR++EKD+  ++ELE  V  G LS L+ +FSRDQ   +      YVQ  +    
Sbjct: 600 MWLFFGCRHREKDFLYQKELESFVETGTLSRLFTSFSRDQGFTVSLSTPRYVQDNLKLQG 659

Query: 193 ETIWRL-LNNNAHVFISGNAK 252
           + I  L LN+ A V++ G+AK
Sbjct: 660 DKIADLVLNDGAVVYVCGDAK 680


>SB_25857| Best HMM Match : NAD_binding_1 (HMM E-Value=1.9e-07)
          Length = 166

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 40  LFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQ 150
           LFFGCR+K +DY    ELE    DG +S L+ AFSRDQ
Sbjct: 60  LFFGCRHKAQDYIYENELEDYAADGTISRLHVAFSRDQ 97


>SB_29712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +1

Query: 115 NLSLYCAFSRDQEDKIYVQHKIFENRETIWRLLNNNAHVFISGNAKRCRTTC 270
           N ++  + S+D+ DKI ++ K+F  R+   R+L    HVF++ + ++ R  C
Sbjct: 1   NRNITASCSKDRSDKIKIREKLFGLRK---RILCQFGHVFVALHLRKIRALC 49


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
 Frame = +3

Query: 177  DIREPRDDLATA----EQQRPRVHIRQRQEMPDNVREALADVIRVCSGTSAAASSDAVRS 344
            D+  P D LA A     +  P  H RQ +E     +E L+ V+R+    S A       S
Sbjct: 1031 DVSAPVDRLAGAALAISKAEPSAHARQEREFDAQAQELLSRVVRMSGSASKAVQHSGYAS 1090


>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 93  GGDGGRWELEFVLRFF*RPGR*DLRPAQD--IRE-PRDDLATAEQQRPRVHIRQRQEMPD 263
           G +GG W  E ++R     G    RP +   +RE PR+     E  R    +R+     +
Sbjct: 119 GSEGG-WFGEEIVRAVSEKGGVRERPRESERVRESPRESERVRESPRESERVRESPRGSE 177

Query: 264 NVREALADVIRV 299
            VRE+L +  RV
Sbjct: 178 RVRESLREAERV 189


>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 76  HCREELEGMVGDGNLSLYCAFSRDQEDKIYVQHKIF 183
           H  ++ E  VGDG + L CA +R+   +IY + + F
Sbjct: 578 HIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRF 613


>SB_25455| Best HMM Match : DUF948 (HMM E-Value=0.11)
          Length = 260

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 88  ELEGMVGDGNLSLYCAFSRDQEDKIYVQHKIFENRETIWRLLNNNAHVFIS 240
           ++   + + N ++    S+D+ DKI +  K+F  R+   R+L    HVF++
Sbjct: 202 QINSSLSEKNRNITVCCSKDRSDKIKILEKLFGLRK---RILCQFGHVFVA 249


>SB_18749| Best HMM Match : Homeobox (HMM E-Value=6.1e-28)
          Length = 222

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 181 FENRETIWRLLNNNAHVFISGNAKRCRTTCGRRSLTSS 294
           F+NR T W+      +   + N+   RT CG  S +SS
Sbjct: 157 FQNRRTKWKKQEKEINEDANHNSDEQRTECGNESDSSS 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,249,056
Number of Sequences: 59808
Number of extensions: 427394
Number of successful extensions: 1015
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)