Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0125
(659 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21) 31 0.63
SB_39050| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21) 31 0.63
SB_40636| Best HMM Match : Gal_Lectin (HMM E-Value=3.4e-22) 31 0.83
SB_25911| Best HMM Match : Gal_Lectin (HMM E-Value=8.1e-37) 31 0.83
SB_21403| Best HMM Match : Gal_Lectin (HMM E-Value=1.6e-20) 31 0.83
SB_32755| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_57428| Best HMM Match : Gal_Lectin (HMM E-Value=1.7e-23) 28 5.9
SB_49597| Best HMM Match : Gal_Lectin (HMM E-Value=9e-23) 28 5.9
SB_47571| Best HMM Match : Gal_Lectin (HMM E-Value=1.7e-23) 28 5.9
SB_34737| Best HMM Match : Gal_Lectin (HMM E-Value=1.7e-23) 28 5.9
SB_21670| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-17) 28 5.9
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31) 28 7.7
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06) 28 7.7
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 28 7.7
>SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
Length = 1405
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 152 GLQKCMDGTVVTKTRLNL-HTISAICY*QSITTMCCPSSKSRFIV 283
G +C G V+ N T +C SI T CC S KS+ ++
Sbjct: 1324 GTLRCPKGKVIVMAYANYGRTAKGVCRHNSIKTTCCYSRKSKILI 1368
>SB_39050| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
Length = 203
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 152 GLQKCMDGTVVTKTRLNL-HTISAICY*QSITTMCCPSSKSRFIV 283
G +C G V+ N T +C SI T CC S KS+ ++
Sbjct: 122 GTLRCPKGKVIVMAYANYGRTAKGVCRHNSIKTTCCYSRKSKILI 166
>SB_40636| Best HMM Match : Gal_Lectin (HMM E-Value=3.4e-22)
Length = 124
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 152 GLQKCMDGTVVTKTRLNL-HTISAICY*QSITTMCCPSSKSRFIV 283
G +C G V+ N T +C SI T CC S KS+ ++
Sbjct: 43 GTLRCPKGKVIVVAYANYGRTAKGVCRHNSIKTTCCYSRKSKILI 87
>SB_25911| Best HMM Match : Gal_Lectin (HMM E-Value=8.1e-37)
Length = 413
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 152 GLQKCMDGTVVTKTRLNL-HTISAICY*QSITTMCCPSSKSRFIV 283
G +C G V+ N T +C SI T CC S KS+ ++
Sbjct: 332 GTLRCPKGKVIVVAYANYGRTAKGVCRHNSIKTTCCYSRKSKILI 376
>SB_21403| Best HMM Match : Gal_Lectin (HMM E-Value=1.6e-20)
Length = 244
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 152 GLQKCMDGTVVTKTRLNL-HTISAICY*QSITTMCCPSSKSRFIV 283
G +C G V+ N T +C SI T CC S KS+ ++
Sbjct: 163 GTLRCPKGKVIVVAYANYGRTAKGVCRHNSIKTTCCYSRKSKILI 207
>SB_32755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 701
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = -2
Query: 523 SDALHLYAVKESRSIDGSLFSYLFADSLRGYSS*L*MGR*AHGLN-LREFANTSPSKSSA 347
+++ ++ + ESR+IDG+ S++ A + R G N R ANT S++ A
Sbjct: 549 NESRNIDGLNESRNIDGTNESHIIASTDE--------SRNIDGQNESRNIANTDESRNIA 600
Query: 346 SLNQDRNRDS*ENPARN 296
S ++ RN D N +RN
Sbjct: 601 STDESRNSDG-TNESRN 616
>SB_57428| Best HMM Match : Gal_Lectin (HMM E-Value=1.7e-23)
Length = 100
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 152 GLQKCMDGTVVTKTRLNL-HTISAICY*QSITTMCCPSSKSRFIV 283
G +C G V+ N T +C SI T C SSKS+ ++
Sbjct: 19 GTLRCPKGKVIVVAYANYGRTAKGVCRHNSIKTTRCYSSKSKILI 63
>SB_49597| Best HMM Match : Gal_Lectin (HMM E-Value=9e-23)
Length = 122
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 152 GLQKCMDGTVVTKTRLNL-HTISAICY*QSITTMCCPSSKSRFIV 283
G +C G V+ N T +C SI T C SSKS+ ++
Sbjct: 41 GTLRCPKGKVIVVAYANYGRTAKGVCRHNSIKTTRCYSSKSKILI 85
>SB_47571| Best HMM Match : Gal_Lectin (HMM E-Value=1.7e-23)
Length = 100
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 152 GLQKCMDGTVVTKTRLNL-HTISAICY*QSITTMCCPSSKSRFIV 283
G +C G V+ N T +C SI T C SSKS+ ++
Sbjct: 19 GTLRCPKGKVIVVAYANYGRTAKGVCRHNSIKTTRCYSSKSKILI 63
>SB_34737| Best HMM Match : Gal_Lectin (HMM E-Value=1.7e-23)
Length = 100
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 152 GLQKCMDGTVVTKTRLNL-HTISAICY*QSITTMCCPSSKSRFIV 283
G +C G V+ N T +C SI T C SSKS+ ++
Sbjct: 19 GTLRCPKGKVIVVAYANYGRTAKGVCRHNSIKTTRCYSSKSKILI 63
>SB_21670| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-17)
Length = 237
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 152 GLQKCMDGTVVTKTRLNL-HTISAICY*QSITTMCCPSSKSRFIV 283
G +C G V+ N T +C SI T C SSKS+ ++
Sbjct: 19 GTLRCPKGKVIVVAYANYGRTAKGVCRHNSIKTTRCYSSKSKILI 63
>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
Length = 996
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 151 WAAKVHGWYSRNKNTFESTYNQRHLLLAEHYYNVLPFEQEPFHSHN 288
W Y R+K S+ N +HL+ A + E + FHS N
Sbjct: 347 WCDSAENCYHRSKTNLGSSRNYKHLMDAGGILSDKMHENKHFHSWN 392
>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
Length = 1020
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 376 ANTSPSKSSASLNQDRNRDS-*ENPARNSLSCDYETALARRATHCSNALL 230
ANT P+K +DR+ D+ E +N S + TAL + H A+L
Sbjct: 156 ANTIPTKEGEEEEEDRDDDAEQEKKLQNKQSNNRNTALTKIPLHRDTAIL 205
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 462 EKSEPSIDRLSFTAYKCRASEYRLLPSSITS 554
+K + +ID +SF Y C + +PS ITS
Sbjct: 1163 DKGDIAIDDVSFHTYTCNRTAESAIPSRITS 1193
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,709,435
Number of Sequences: 59808
Number of extensions: 318113
Number of successful extensions: 755
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -