Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0114
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             145   3e-35
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)           29   3.3  
SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)               29   3.3  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   4.3  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   5.7  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  145 bits (351), Expect = 3e-35
 Identities = 65/84 (77%), Positives = 73/84 (86%)
 Frame = +2

Query: 254 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 433
           LIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+R
Sbjct: 493 LIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRR 552

Query: 434 VATGPKNVPYLVTHDGRTIRYPDP 505
           V  G K VPY+VTHD RTIRYPDP
Sbjct: 553 VDVGAKGVPYIVTHDARTIRYPDP 576



 Score =  134 bits (323), Expect = 8e-32
 Identities = 60/68 (88%), Positives = 63/68 (92%)
 Frame = +3

Query: 51  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
           MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484

Query: 231 VLKIVKQR 254
           V KIVKQR
Sbjct: 485 VKKIVKQR 492



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 16/32 (50%), Positives = 26/32 (81%)
 Frame = +1

Query: 502 PTFKVNDSIQLDIATTKIMDFIKFESGNLCMI 597
           P  KVND++ +DI T K++D+IKF++GN+ M+
Sbjct: 576 PNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMV 607


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +2

Query: 200 SSEVCFDRKRSPENCETTLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 373
           SSE      +     E+TL++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 594 SSEYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -1

Query: 650 VSRGTRWCPRRPKLRPPVIIHKFPDSNLMKSIIF---VVAMSNWMESLTLKVGLD 495
           +  G  WCP R K+R   +         + S++     V MS W+E+ T+ V  D
Sbjct: 410 LGNGKAWCPARKKMRNAWLQIDLGAPYYLCSVVAQGETVKMSEWVEAFTIAVSND 464


>SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)
          Length = 1595

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 185 DFPEESSEVCFDRKRSPENCETTLIKVDGKVRTDPTYPA 301
           D  +E +E+  ++ RSP    T  +K D  VRT  T P+
Sbjct: 111 DKEQERAELLSNKSRSPFKQATKSVKSDSSVRTSSTTPS 149


>SB_38450| Best HMM Match : zf-CCHC (HMM E-Value=0.00018)
          Length = 1066

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 185 DFPEESSEVCFDRKRSPENCETTLIKVDGKVRTDPTYPA 301
           D  +E +E+  ++ RSP    T  +K D  VRT  T P+
Sbjct: 118 DKEQERAELLSNKSRSPFKQATKSVKSDSSVRTSSTTPS 156


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +2

Query: 194 EES--SEVCFDRKRSPENCE 247
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 193 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPRAMLDK 41
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR    K
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPRRSKQK 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,617,300
Number of Sequences: 59808
Number of extensions: 456545
Number of successful extensions: 1155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)