Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c09
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38432| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_38432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +1

Query: 397 QVPSQEYFRPA--AVINQTRNRNESERIASRREGRKKYHGKNQVRPPVGCREKNS 555
           ++ + ++ R A  A + QT N  E++R AS    RK+ H  +Q +  +  ++KN+
Sbjct: 353 EMKASKHLREAIFATLQQTANDLEAQRKASEYSFRKRIHETDQAKSELEWQQKNT 407


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 539  HPTGGRTXXXXXXXFLPSLRDAIRSLSLRFRV*FITAAGLKYSCDGTW-CRTL 384
            +PT G+        FLPSLR   R L  +FR+      G +YS   T  C+ L
Sbjct: 2189 NPTQGKPCVNSDFTFLPSLRSENRELVAKFRLSNTPGKGTRYSYFSTMSCQIL 2241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,438,076
Number of Sequences: 59808
Number of extensions: 333773
Number of successful extensions: 607
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)