Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c05
(475 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33) 35 0.030
SB_9163| Best HMM Match : XS (HMM E-Value=0.84) 33 0.092
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036) 32 0.21
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.37
SB_40275| Best HMM Match : Cadherin (HMM E-Value=0) 31 0.49
SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_27495| Best HMM Match : VWA (HMM E-Value=0) 28 4.5
SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22) 28 4.5
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0) 27 6.0
SB_42355| Best HMM Match : EGF (HMM E-Value=2.9e-05) 27 6.0
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 27 6.0
SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_4156| Best HMM Match : Ets (HMM E-Value=0) 27 7.9
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 35.5 bits (78), Expect = 0.023
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 74 CPPVCSPPDCRPICGPASPLLCQSSVPP 157
CP CSP CRP C PL+C S PP
Sbjct: 1669 CPATCSPDSCRPEC----PLICCSVCPP 1692
Score = 31.9 bits (69), Expect = 0.28
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVPPTQRC 169
PPV P C C P P++C + P C
Sbjct: 1795 PPVVCPKSCETTCTPDCPVMCCKNSSPATEC 1825
Score = 25.8 bits (54), Expect(2) = 2.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 68 GYCPPVCSPPDCRPIC 115
G CP C P +C+P C
Sbjct: 1456 GECPAGCLPSNCKPDC 1471
Score = 21.0 bits (42), Expect(2) = 2.8
Identities = 7/16 (43%), Positives = 8/16 (50%)
Frame = +2
Query: 92 PPDCRPICGPASPLLC 139
P DC C P P+ C
Sbjct: 1494 PSDCFESCKPNCPIKC 1509
>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
Length = 321
Score = 35.1 bits (77), Expect = 0.030
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 71 YCPPVCSPPDCRPICGPASPLL--CQSSVPPTQRC 169
Y PP +P C P C P SP+ CQSS PT+ C
Sbjct: 285 YQPPPMAPMGCAPQCSPVSPMFMGCQSSC-PTRCC 318
>SB_9163| Best HMM Match : XS (HMM E-Value=0.84)
Length = 424
Score = 33.5 bits (73), Expect = 0.092
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 68 GYCPPVCSPPDCRPICGPASPLLCQSSVPP 157
G C P C+P C P+C ++ LL Q+ +PP
Sbjct: 302 GSCLPACAP-GCNPLCCSSTSLLHQNRIPP 330
>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
Length = 1336
Score = 32.3 bits (70), Expect = 0.21
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 110 ICGPASPLLCQSSVPPTQRCY 172
+CG + LLC+ VPP RCY
Sbjct: 555 VCGESKCLLCKEMVPPDHRCY 575
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 31.5 bits (68), Expect = 0.37
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQSSVP 154
PP PP C P+C A+P C ++ P
Sbjct: 1518 PPAPPPPVCMPMCAVAAPAPCPAACP 1543
>SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1747
Score = 31.1 bits (67), Expect = 0.49
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 134 LCQSSVPPTQRCYPVNPCINIYSCYTQI 217
L ++ PP +RC P NPC++ CY +
Sbjct: 988 LYEAVFPPEKRCKPHNPCLHGGKCYETV 1015
>SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 41 VYKLKK*KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINI 196
+Y+ K C PV + C P+ P+ S P C PVN C+N+
Sbjct: 112 IYREDKPVNNSCEPVNN--SCEPVNNSCEPVN-NSCEPVNNSCEPVNNCVNM 160
>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
Length = 1064
Score = 27.9 bits (59), Expect = 4.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 92 PPDCRPICGPASPLLCQSSVPPTQR 166
P C+P+ P P++C+ ++P R
Sbjct: 795 PGKCKPVESPVDPVICRGTLPNPSR 819
>SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)
Length = 649
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 262 KTFLNSL*KSSIALHNLSVTAVYVDARIYRIAPLCWW 152
K F+ ++ K S+ +H L+ + DAR R PL W+
Sbjct: 10 KAFVGNIDKDSVKIHWLTK---FFDARFVRFYPLAWY 43
>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
Length = 1227
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 80 PVCSPPDCRPICGPA--SPLLCQSSVPPTQRCYP 175
P+ +P+ GPA SP+ C ++VP C P
Sbjct: 764 PISRVSPFQPVTGPAAPSPVPCNTTVPSAVACVP 797
>SB_42355| Best HMM Match : EGF (HMM E-Value=2.9e-05)
Length = 241
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Frame = +2
Query: 113 CGPASPLLCQSS-------VPPTQRCYPVNPCINIYSCYT 211
C P SP C S VP C+ NPC N SC T
Sbjct: 135 CVPGSPENCVSDAKWHQYVVPTKDECFTGNPCKNGGSCVT 174
>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
Length = 1189
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 92 PPDCRPICGPASPLLCQSSVPPTQRC 169
P DC C P C S+ PPT +C
Sbjct: 935 PSDCHFSCYPQCTPECCSTTPPTAQC 960
>SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +2
Query: 74 CPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPC 187
CP C P P+ P +P L + PP PC
Sbjct: 18 CPTPCYGPVPHPLLRPCAPPLATALSPPPATALCPTPC 55
>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
Length = 516
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 374 K*LQNRQFQ--FCYPTSRVRCNENNILKRKPICFGKRNL*DIFKFTIE 237
K LQ R ++ F Y T R N N+ K IC GK N KF IE
Sbjct: 23 KRLQYRFYKPMFIYGTIRTTMNSNDDALNKKICSGKNN----HKFDIE 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,825,566
Number of Sequences: 59808
Number of extensions: 274589
Number of successful extensions: 751
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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