Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b16
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37398| Best HMM Match : FHA (HMM E-Value=4.1)                       31   0.46 
SB_29806| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)                     28   3.2  
SB_13496| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_49311| Best HMM Match : Transposase_11 (HMM E-Value=0.27)           26   9.8  
SB_32203| Best HMM Match : GT36_AF (HMM E-Value=9)                     26   9.8  

>SB_37398| Best HMM Match : FHA (HMM E-Value=4.1)
          Length = 205

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 62  LLDYNNYITMSRLRALFANAFRGKSYVGKAQESLRLQNRHHHDEGPPQPFDNLP 223
           +L YNN  T+  +     +A RGK++V    + L +  R  +  G   P + LP
Sbjct: 139 VLTYNNQTTLYGINIWLLHANRGKAFVNSQTKGLLMYQRIPYLAGYRNPCERLP 192


>SB_29806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 83  ITMSRLRALFANAFRGKSYVGKAQESLRLQNR 178
           + + R +A FA  F G+ YV K Q  LRL N+
Sbjct: 22  VIVIRHQARFAEEFHGRGYVEKVQVVLRLGNQ 53


>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
          Length = 646

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 393 FTQRHSLFIQKVKSNKY*IHNDFFAMEYHNMINGAQKPVPKKIENT 256
           FTQ HS +     S+K    N+ FA  YH++I+ A      ++ENT
Sbjct: 110 FTQEHSKYC--TASDK--TENETFAEMYHSLIHSAALETLLQLENT 151


>SB_13496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 146 KAQESLRLQNRHHHDEGP 199
           K  E  +   RHHH EGP
Sbjct: 494 KPSEDAKFAERHHHGEGP 511


>SB_49311| Best HMM Match : Transposase_11 (HMM E-Value=0.27)
          Length = 357

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -3

Query: 209 TVEVVPRRGDVDSEASMIPALCRHSSCHGKHWQIKPLTCSL*CNYYSQVNLSNSR 45
           T   +P  G      ++ P +   S+   K W +KP TCS   N     N   SR
Sbjct: 259 TTSYIPEIGKEVGVVTVPPLILGDSAFPIKPWLMKPYTCSRPTNQQRYFNYRLSR 313


>SB_32203| Best HMM Match : GT36_AF (HMM E-Value=9)
          Length = 123

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +1

Query: 190 RGTTSTVR*FAF*IYKSICSNISIFNLLRNRFLGTIYHIVVLHGKEIVVN 339
           +G + +VR +AF      CSN SI   L  +   T   +  LHGK   VN
Sbjct: 72  KGHSFSVRTYAF---LDPCSNTSILKQLNIKGEKTTLSLTTLHGKNKPVN 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,264,442
Number of Sequences: 59808
Number of extensions: 207158
Number of successful extensions: 500
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)