Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b07
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_13318| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_14830| Best HMM Match : NADH5_C (HMM E-Value=1.1)                   28   6.7  

>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 411 CMY-RRRVGIIMNIQTNRQCPL*NSCAEAYSLKLDPRL-RVQTFELMQYIRIQSP 569
           C+Y  RRVG    I  N  CP+ N C      KL  R+ RV +F L+ YI    P
Sbjct: 554 CLYITRRVGRRDVILENSSCPV-NRCGRRRHSKLQTRMTRVFSFVLITYILCYGP 607


>SB_13318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 412 VCTD-DV*VLL*TYKQTDNVHCEIPAQK 492
           +C D DV  +L TY++T NV C I AQ+
Sbjct: 2   ICVDGDVGTVLKTYRETVNVDCRIGAQR 29


>SB_14830| Best HMM Match : NADH5_C (HMM E-Value=1.1)
          Length = 175

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 560 YTNVLH*LK-RLNTQPRIQFQTVRFCAGISQWTLSVCLY 447
           Y N +H  + RLNT   + +  V F +GISQ   + CL+
Sbjct: 117 YQNYIHPYRHRLNTHQALIWSVVIFNSGISQNASAYCLF 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,097,919
Number of Sequences: 59808
Number of extensions: 356819
Number of successful extensions: 1650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)