Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a10
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13705| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_38811| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)         29   3.7  

>SB_13705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 781

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 399 DQFRVIKFKAWFIVMVLRKTSVIFLCFPITTM*NLKGPDRIKF 271
           DQF ++    W + + L +T  +   +P+TT+ N +  DR +F
Sbjct: 266 DQFCLLHISRWGVTLALERTRAVLAQWPLTTIRNYESMDRGEF 308


>SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 460 LKVLLECLAAPVA--MVLDQVHGSIQSHQIQGLVHSHGTQKD*CNFPLFPHY 311
           LK++ EC++  +     L +V   IQ H I G+V +H +Q        F H+
Sbjct: 225 LKIISECVSKELGNKTKLAEVVDIIQQHDIFGIVETHASQNTDLAVEKFKHF 276


>SB_38811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 460 LKVLLECLAAPVA--MVLDQVHGSIQSHQIQGLVHSHGTQKD*CNFPLFPHY 311
           LK++ EC++  +     L +V   IQ H I G+V +H +Q        F H+
Sbjct: 550 LKIISECVSKELGNKTKLAEVVDIIQQHDIFGIVETHASQNTDLAVEKFKHF 601


>SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)
          Length = 1012

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 460 LKVLLECLAAPVA--MVLDQVHGSIQSHQIQGLVHSHGTQKD*CNFPLFPHY 311
           LK++ EC++  +     L +V   IQ H I G+V +H +Q        F H+
Sbjct: 611 LKIISECVSKELGNKTKLAEVVDIIQQHDIFGIVETHASQNTDLAVEKFKHF 662


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,596,500
Number of Sequences: 59808
Number of extensions: 368856
Number of successful extensions: 740
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)