Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10b03
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              218   3e-57
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              176   1e-44
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         36   0.030
SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)                      32   0.38 
SB_3221| Best HMM Match : rve (HMM E-Value=3)                          29   2.0  
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   4.6  
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)                        28   4.6  
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)                 27   8.1  
SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)               27   8.1  
SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                 27   8.1  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  218 bits (532), Expect = 3e-57
 Identities = 97/116 (83%), Positives = 109/116 (93%)
 Frame = +2

Query: 47  KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 226
           KPRG+RTARK  +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQP
Sbjct: 2   KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61

Query: 227 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 394
           NSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 62  NSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  176 bits (428), Expect = 1e-44
 Identities = 81/91 (89%), Positives = 89/91 (97%)
 Frame = +2

Query: 197 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAV 376
           ++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAV
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAV 112

Query: 377 GDIPGVRFKVVKVANVSLLALYKEKKERPRS 469
           GDIPGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 113 GDIPGVRFKVVKVANVSLLALFKEKKERPRS 143


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = +2

Query: 182 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 298
           KG+ ++    + K+PNSA RKC  ++L  NGK ++A++P
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267


>SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)
          Length = 488

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
 Frame = -2

Query: 264 MSCTRTHLRMAELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHR 100
           M C   +    E+ C    PT  R     T     DA P GL  H   M   L+  +  R
Sbjct: 58  MPCQLDYPNYREMPCQLDCPTTERCPANWTTQLQRDALPTGLPKHR-EMPCQLDYPTTER 116

Query: 99  CSRRWFTCLRAVRIPRGLP 43
           C   W T L+   +P GLP
Sbjct: 117 CPANWTTQLQRDALPTGLP 135



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -2

Query: 231 ELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 67
           E+ C    PT  R     T     DA P GL  ++  M   L+  +  RC   W T L+ 
Sbjct: 139 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMSCQLDYPTTERCPANWTTQLQR 197

Query: 66  VRIPRGLP 43
             +P GLP
Sbjct: 198 DTLPTGLP 205



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -2

Query: 231 ELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 67
           E+ C    PT  R     T     DA P GL  ++  M   L+  +  RC   W T L+ 
Sbjct: 104 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMPCQLDYPTTERCPANWTTQLQR 162

Query: 66  VRIPRGLP 43
             +P GLP
Sbjct: 163 DALPTGLP 170


>SB_3221| Best HMM Match : rve (HMM E-Value=3)
          Length = 324

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = -2

Query: 492 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWF 313
           S  T  TYDL  SF+S+  +  + LAT   +K++P +   +  L+P  A   S  S    
Sbjct: 9   SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKPR-ANCASIASETLA 66

Query: 312 RQPSRGTNAV 283
           +Q  R  N V
Sbjct: 67  QQCWRSLNTV 76


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 127 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 225
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 195  RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 100
            R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 902  RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
          Length = 471

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -1

Query: 307 TVTGDECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 191
           T   D+   F    NE      AD R GL+    NF+ED
Sbjct: 159 TTDPDKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 197


>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
          Length = 255

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 87  TVVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 179
           T V    R  N++KP  +R+GR+T+S+  +T
Sbjct: 103 THVQFHHRDTNTKKPVHLRDGRVTVSLAAMT 133


>SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)
          Length = 294

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 295 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 191
           D+   F    NE      AD R GL+    NF+ED
Sbjct: 114 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 148


>SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 256

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 119 ILCPPIAVHDGGSRAYAPFV 60
           ++ PP  + DG SRA+APF+
Sbjct: 215 LIKPPSTIVDGRSRAHAPFI 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,703,239
Number of Sequences: 59808
Number of extensions: 449330
Number of successful extensions: 979
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)