Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10a13
         (255 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)                   72   9e-14
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   3e-13
SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)              27   2.4  
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         27   3.2  
SB_22634| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.6  
SB_54293| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_38558| Best HMM Match : TFIIA_gamma_N (HMM E-Value=7.4)             26   5.6  
SB_22025| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.12)               26   5.6  
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)                   26   5.6  

>SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)
          Length = 332

 Score = 71.7 bits (168), Expect = 9e-14
 Identities = 29/47 (61%), Positives = 38/47 (80%)
 Frame = +3

Query: 6   WSLMDNFEWLEGYTERFGLYEVDFSDPARPRTPRKSAFVYKEILRSR 146
           WSLMDNFEW +GY  RFG++ VDF DP + RTP+KSA V+KEI+ ++
Sbjct: 283 WSLMDNFEWDDGYKFRFGVHHVDFDDPHKHRTPKKSALVFKEIVANK 329


>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 28/45 (62%), Positives = 36/45 (80%)
 Frame = +3

Query: 3   AWSLMDNFEWLEGYTERFGLYEVDFSDPARPRTPRKSAFVYKEIL 137
           AWSLMDNFEW +GY   FG++ V+F+DP RPR P+KSA  YK+I+
Sbjct: 454 AWSLMDNFEWFQGYNMPFGIHFVNFTDPNRPRLPKKSAIFYKKIV 498


>SB_57688| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-08)
          Length = 262

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 115 ADLRGVRGRAGSEKSTSYKPKRSVYPSNHSKLSIRLQ 5
           AD  GVR R+   K    +  R  +P N S +++R Q
Sbjct: 220 ADYAGVRNRSNRAKWVMEEHHRRCHPENRSYVAVRKQ 256


>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 83  SRPPSHPAQVRLRLQGDLEKQGHRP-RLRAQHYRH 184
           S P     ++ +  +GDLE+  HRP RL  ++++H
Sbjct: 264 SSPSRQTKELSVYCEGDLEENDHRPSRLHWRNHQH 298


>SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 77  FGSRPPSHPAQVRLRLQGDLEKQGHRPRLRAQHYRHDHRR 196
           +G    + P+   +RLQG    +   P  RA+H R  H+R
Sbjct: 227 YGDFSDNLPSLELIRLQGGGRMEAPSPGSRAEHSRWHHKR 266


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 6    WSLMDNFEWLEGYTERFGLYEVDFSDPARPRTPRKSAFVYKEILRSRVIDHD--YEPNTT 179
            WS    +  LE   +  G   +D+ DP+    P K+  V + ++   V + D    P   
Sbjct: 943  WSNKIEYVELEKADKGLGFSILDYQDPS---NPEKTVIVIRSLVHGGVAEQDGSLHPGDR 999

Query: 180  VMTIDE 197
            +M+++E
Sbjct: 1000 LMSVNE 1005


>SB_22634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 115 ADLRGVRGRAGSEKSTSYKPKRSVYPSNHSKLSIRLQ 5
           AD  GVR R+   K    +  R  +P N S + +R Q
Sbjct: 215 ADYAGVRNRSNRAKWVMEEHHRRCHPENRSYVPVRKQ 251


>SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 6   WSLMDNFEWLEGYTERFGLYEV 71
           WS  D  EWL+  TER+ + +V
Sbjct: 125 WSKWDVLEWLKWATERYNVKDV 146


>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 119 RLQGDLEKQGHRPRLRAQHYRHDHRRGTLR 208
           R  GD  ++ HRP+       +D RRGT R
Sbjct: 276 RDSGDSHERQHRPQRSGSDASNDSRRGTHR 305


>SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 44  HRTFRFVRG*LFGSRPPSHPAQVRLRLQ--GDLEKQGH 151
           H  FR  R    G+RPPS P + R++L+  GD  +  H
Sbjct: 100 HSFFR-ERSPTLGNRPPSSPVRGRIKLKKSGDWRRDIH 136


>SB_54293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 83  SRPPSHPAQVRLR--LQGDLEKQGHRPRLRAQHYRHDHRRGTLR 208
           S P S    +R R  L G L K   RPR   Q YR+   RG  R
Sbjct: 66  SDPKSDALSIRTRDYLYGVLNKIVRRPRRDYQAYRYRRPRGGAR 109


>SB_38558| Best HMM Match : TFIIA_gamma_N (HMM E-Value=7.4)
          Length = 164

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 119 RLQGDLEKQGHRPRLR 166
           RL G LEKQG+R R+R
Sbjct: 124 RLLGRLEKQGYRARIR 139


>SB_22025| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.12)
          Length = 495

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 115 ADLRGVRGRAGSEKSTSYKPKRSVYPSNHSKLS 17
           A L+ V+  A S+ STS KP++ V  + +S  S
Sbjct: 279 AVLQKVKNEASSKPSTSQKPRKPVTAARNSNQS 311


>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
          Length = 681

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 128 GDLEKQGHRPRLRAQHYRHDHRRGTLRQY*E 220
           G+L KQG++ R  +  + +D+R   LR Y E
Sbjct: 639 GNLIKQGNKTRSHSNPFFNDNRYSRLRPYSE 669


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,493,355
Number of Sequences: 59808
Number of extensions: 110160
Number of successful extensions: 348
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 16,821,457
effective HSP length: 61
effective length of database: 13,173,169
effective search space used: 302982887
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)