Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0108
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47924| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.081
SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)                   31   1.3  
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_15431| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)                    29   4.0  
SB_51131| Best HMM Match : ResIII (HMM E-Value=0.36)                   29   4.0  
SB_24201| Best HMM Match : DUF59 (HMM E-Value=7.5)                     29   4.0  
SB_59325| Best HMM Match : zf-CCHC (HMM E-Value=7.2)                   28   7.0  

>SB_47924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 34.7 bits (76), Expect = 0.081
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 14  EEWVPVFTRDXXXXXXXXXXXXXFSDAYLTGMPSRKRR 127
           EEWVP+  +D             FSDAYL+G+P ++R+
Sbjct: 260 EEWVPILAQDVMRQRRIPPQQP-FSDAYLSGLPPKRRK 296


>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
          Length = 1161

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 346 GAACVQESCCRNVTRWIVVLGIRSAVAGDVAHVLA 242
           G+ C Q  CC    RW    G+ + V  D A  LA
Sbjct: 121 GSLCGQTQCCHRCLRWWTPTGLFTVVGKDTAEPLA 155


>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1175

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 346 GAACVQESCCRNVTRWIVVLGIRSAVAGDVAHVLA 242
           G+ C Q  CC    RW    G+ + V  D A  LA
Sbjct: 842 GSLCGQTQCCHRCLRWWTPTGLFTVVGKDTAEPLA 876


>SB_15431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 239 FREHMRNIARNRASDSE-DYDPARYVSAARFLNAGRSDSRQ 358
           +R+  R ++   +S S  DYDPA Y SAA F   G  D R+
Sbjct: 26  YRDRFRTLSSESSSSSLLDYDPAIYRSAA-FSGRGEPDKRR 65


>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
          Length = 1311

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 479 KCPNWVIPTSWGDELSNDSFNPTIRSPRIIHPCC 378
           KCP W++P +WG  L N+  +  I+     + CC
Sbjct: 333 KCPRWLVPKAWG--LPNELIDAYIKFDE--NDCC 362


>SB_51131| Best HMM Match : ResIII (HMM E-Value=0.36)
          Length = 738

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 367 LWWLAAVGAACVQESCCRNVTRW 299
           +WW    G+ C +  CC    RW
Sbjct: 135 VWWSRTSGSLCGKTQCCHRCLRW 157


>SB_24201| Best HMM Match : DUF59 (HMM E-Value=7.5)
          Length = 170

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 367 LWWLAAVGAACVQESCCRNVTRW 299
           +WW    G+ C +  CC    RW
Sbjct: 135 VWWSRTSGSLCGKTQCCHRCLRW 157


>SB_59325| Best HMM Match : zf-CCHC (HMM E-Value=7.2)
          Length = 107

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -2

Query: 433 RMIHLIRQFALLGSFILAVFARLWWLAAVGAACVQESCCRNVTRWIVVLGIRSAVAGDVA 254
           R + L+   ALLG FI +V  R   L  +      E      TR    +GI S V   + 
Sbjct: 5   RSVFLLWSAALLG-FIASVECRAQGLKNIE----HEHDLMASTRGKPRVGINSEVYAPLD 59

Query: 253 HVLAERCTYCGAIC 212
           +++ E+C +CG  C
Sbjct: 60  NLIFEQCFFCGRFC 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,066,864
Number of Sequences: 59808
Number of extensions: 378560
Number of successful extensions: 818
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)