Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0101
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_437| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00012)           31   1.1  
SB_395| Best HMM Match : Peptidase_A17 (HMM E-Value=5.9e-05)           31   1.1  
SB_40784| Best HMM Match : TGF_beta (HMM E-Value=6.40393e-43)          30   2.0  
SB_38060| Best HMM Match : ITAM (HMM E-Value=1.3)                      29   3.5  
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   6.0  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   8.0  

>SB_437| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00012)
          Length = 592

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 463 ETDTVNAEPVGDRESGQKYGLLSLTSSHRQPISSPAMY 576
           E DT+ ++P+ DR    K G+LS TSS   P+   A Y
Sbjct: 140 EQDTLYSKPLKDRFPDTKRGVLSATSSVFDPLGLAAPY 177


>SB_395| Best HMM Match : Peptidase_A17 (HMM E-Value=5.9e-05)
          Length = 659

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 463 ETDTVNAEPVGDRESGQKYGLLSLTSSHRQPISSPAMY 576
           E DT+ ++P+ DR    K G+LS TSS   P+   A Y
Sbjct: 444 EQDTLYSKPLKDRFPDTKRGVLSATSSVFDPLGLAAPY 481


>SB_40784| Best HMM Match : TGF_beta (HMM E-Value=6.40393e-43)
          Length = 1402

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 463 ETDTVNAEPVGDRESGQKYGLLSLTSSHRQPISSP 567
           E +T    PV   ESGQ+YG  S T ++ +P S P
Sbjct: 681 EANTRPQSPVDFTESGQRYGQPSQTGANTRPQSPP 715


>SB_38060| Best HMM Match : ITAM (HMM E-Value=1.3)
          Length = 401

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +1

Query: 427 SLEYDSSTVKPNETDTVNAEPVGDRESGQKYGLLSLTSSHRQPISSPAM 573
           SL+  +   +P    T+ ++  G  +S  K  ++ L+SSH++PI +P++
Sbjct: 156 SLDQSTRGQRPPSGCTIQSQAEGSLDS--KLPVVDLSSSHKEPIKAPSV 202


>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 320 CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 201
           C  ++H G+++ I   + R Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 308 WHWGSVDSISGSRARFQLSGNSGRKHSR 225
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,758,574
Number of Sequences: 59808
Number of extensions: 397727
Number of successful extensions: 875
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)