Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0088
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4110| Best HMM Match : NAPRTase (HMM E-Value=0.011)                 62   3e-10
SB_25488| Best HMM Match : Death (HMM E-Value=1.4e-12)                 31   0.98 
SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_1619| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  

>SB_4110| Best HMM Match : NAPRTase (HMM E-Value=0.011)
          Length = 283

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 27/53 (50%), Positives = 39/53 (73%)
 Frame = +3

Query: 306 DIKYLKQTLPENIEPEFYLYLKELTCKDIIVSAIEEGSVVFPRVPLLRVEGPL 464
           +I+YLK+ LP   E EF+ +LK +    + + A+ EGS+VFP+VPL+RVEGPL
Sbjct: 45  NIEYLKKNLPPTTEEEFFTFLKTIDPGSVELWAVPEGSIVFPKVPLIRVEGPL 97



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = +2

Query: 683 KMFNIPVKGTHAHSFVTSF 739
           K+++IPVKGT AH+FV+SF
Sbjct: 110 KLYDIPVKGTMAHAFVSSF 128



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = +1

Query: 649 GFDGTSNVLAGKDVQYTGKG 708
           GFDGTSNVLAGK      KG
Sbjct: 99  GFDGTSNVLAGKLYDIPVKG 118


>SB_25488| Best HMM Match : Death (HMM E-Value=1.4e-12)
          Length = 387

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 32/124 (25%), Positives = 49/124 (39%)
 Frame = +3

Query: 309 IKYLKQTLPENIEPEFYLYLKELTCKDIIVSAIEEGSVVFPRVPLLRVEGPLIVAQLLET 488
           ++ L +     IE  FYL + +    DI +  + E S +  R  L++ +GP    Q L  
Sbjct: 11  VRQLSKLYHSGIERNFYLVVIDFNSTDIDMRRMLENSGISDRYFLIKKKGPFYKTQALN- 69

Query: 489 TLLTLVNFASLMATNAARYRMVAGKNVSLLEFGLRRAQGPDGGLSASKYAYIGGF*RDQQ 668
                   A+L+        +   K V  L+ G    Q P GG     Y  +G +  D  
Sbjct: 70  ------EGAALIKHTLEGLTLFVPKLVK-LKCGY-SPQYPQGGWDTLGYGLLGIYKTDWD 121

Query: 669 RSGG 680
           R GG
Sbjct: 122 RIGG 125


>SB_15824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 562  KMYPYSNSDYGERKDPMEGFRRPNMRTSVGFDGTSNVLAGKDVQ 693
            K+Y Y     GE K   +G +R  ++ S+GFD   + L GK+ Q
Sbjct: 1167 KLYSYRMDGGGEAKK-CKGVKRAVVKKSIGFDDYKDCLFGKEPQ 1209


>SB_1619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
 Frame = -3

Query: 657 VKTHRCTHIWTPKALHRVLALSVVRIRVGIHF---YRPPSDISQRSWPS--NWQS*LMLA 493
           + T R + I  P  +H + +L +V  R GI F   + P  + +     S  NWQ+ L LA
Sbjct: 576 ILTSRTSRI--PSIMHLLRSLLLVAARQGISFSAAHVPGVENAVADAVSRVNWQALLTLA 633

Query: 492 EW---SPIAVPQ 466
            W   SP ++PQ
Sbjct: 634 PWAAPSPTSIPQ 645


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,656,215
Number of Sequences: 59808
Number of extensions: 515639
Number of successful extensions: 1200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)