Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0030
(502 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.93
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 30 0.93
SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31) 30 1.2
SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_31326| Best HMM Match : rve (HMM E-Value=6.1e-07) 29 2.2
SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_23886| Best HMM Match : Adeno_VII (HMM E-Value=8.7) 29 2.8
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_31168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_38561| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4) 28 5.0
SB_25299| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23) 28 5.0
SB_12038| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_6358| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09) 27 8.7
SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_11608| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 30.3 bits (65), Expect = 0.93
Identities = 38/135 (28%), Positives = 44/135 (32%), Gaps = 2/135 (1%)
Frame = -2
Query: 450 ASPSGAIGAWA-TKRAAGQSTRAT*DHAAA-GARTAERFFKRCTPPCSRAFPVK*TARSW 277
A+P G A T A G +T A AA G TA P + A P TA
Sbjct: 720 AAPGGTTAAQGGTTVAPGGTTAAPGGTTAAPGGTTAAPGGTTAAPGGTTAAPGGTTAAPG 779
Query: 276 FTLRVSSGLPSAAKILAGCHGGNERGPL*LCAPSTGAAATKGVAIWEPHGADKCPAQPAR 97
T G +A GG P A G A G P G PA
Sbjct: 780 GTTTAPGGTTAAPGGTTAAPGGTTAAPGGTTAAPGGTTAAPGGTTTAPEGTTAAPAATTE 839
Query: 96 PTGAMTLGFANGTAA 52
A G NGT++
Sbjct: 840 SPTASPSG--NGTSS 852
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 30.3 bits (65), Expect = 0.93
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 413 NVRQASRLGLRETTPLQEPEQQNVSSKDAHHHVPEL 306
NVR AS L LR P+Q N++ + H P L
Sbjct: 1634 NVRSASLLELRRIREAMSPDQGNLTKRTGHESSPNL 1669
>SB_4793| Best HMM Match : DUF1279 (HMM E-Value=0.31)
Length = 396
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +2
Query: 275 NHDRAVHFTGKALEHGGVHLLKKRSAVLAPAAAWSHVARVDWPAARLVAHAP 430
+H VHF AL G H++ S VL P HV DW L+A AP
Sbjct: 336 SHALRVHFRSGALPPGR-HVV---SRVLHPRMPTGHVMSTDWLCLVLIAFAP 383
>SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 486 AACPKPQ*PTGPASPSGAIGAWATKRAAGQSTRAT*DHAAAGARTAERFFKRCT 325
A+ P P P A+PS A +W + A ++ +T + GA+ ++ KR T
Sbjct: 126 ASSPAPSQPAA-ATPSDAAASWLSSAKAEAASESTGSSGSQGAKMSDEELKRRT 178
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 492 KCAACPKPQ*PTGPASPSGAIG 427
KC ACPKP P GPA G+ G
Sbjct: 666 KCEACPKP--PPGPAGEPGSPG 685
>SB_31326| Best HMM Match : rve (HMM E-Value=6.1e-07)
Length = 330
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 206 KEVLYNYVRQVLEQQQLKVLRYGSPMARISVQPSRLDP 93
K + YN V+ + ++L +L Y IS P RL P
Sbjct: 79 KNICYNNVKSIFSTRRLPILGYVVEEGNISPDPERLRP 116
>SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 206 KEVLYNYVRQVLEQQQLKVLRYGSPMARISVQPSRLDP 93
K + YN V+ + ++L +L Y IS P RL P
Sbjct: 731 KNICYNNVKSIFSTRRLPILGYVVEEGNISPDPERLRP 768
>SB_23886| Best HMM Match : Adeno_VII (HMM E-Value=8.7)
Length = 212
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 484 SVSQTSMTNRTGQPKWSNRCMGDQTCGRPVDSGYVRPRR 368
S S TS RT QP+ ++ + ++T GR D G + +R
Sbjct: 31 SDSSTSGRQRTEQPRATSSSLSEETVGREHDDGTAQCKR 69
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.7 bits (61), Expect = 2.8
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = -3
Query: 470 LNDQQDRPAQVEQ*VHGRPNVRQASRLGLRETTPLQEPEQQNVSSKDAHHHVPELFP*NE 291
LN Q ++ + Q +PN QA R + T P PE + +HHH + + N
Sbjct: 907 LNSQGEQLGNMIQQQVQQPNGVQA-RPNMPGTLPGNYPESHK-RHRHSHHHHYQHYQYNH 964
Query: 290 QHDRGLH*EYPAVCHR 243
HD H + + HR
Sbjct: 965 HHDHQSHQHHDSHHHR 980
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 250 QTAGYSQCKPRSCCSFYGKSSGTW 321
++ GY + K SCCS YG SG +
Sbjct: 546 KSLGYYEAKEVSCCSRYGTGSGNF 569
>SB_31168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 53 AAVPFAKPSVIAPVGLAGWAGHLSAPWGSHIATPLVAAAPVLGAHNYRGPLSLPP 217
AA P PS+ + + G A W P+ A L NYR P+S+ P
Sbjct: 61 AAAPAIAPSLTKIINQSIKTGRFPARWKEAKVCPIYKAGDRLSVDNYR-PISILP 114
>SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 53 AAVPFAKPSVIAPVGLAGWAGHLSAPWGSHIATPLVAAAPVLGAHNYRGPLSLPP 217
AA P PS+ + + G A W P+ A L NYR P+S+ P
Sbjct: 475 AAAPTIAPSLTKIINQSIKTGRFPARWKEAKVCPIYKAGDRLSVDNYR-PISILP 528
>SB_38561| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4)
Length = 432
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 53 AAVPFAKPSVIAPVGLAGWAGHLSAPWGSHIATPLVAAAPVLGAHNYRGPLSLPP 217
AA P PS+ + + G A W P+ A L NYR P+S+ P
Sbjct: 373 AAAPAIAPSLTKIINQSIKTGRFPARWKEAKVCPIYKAGDRLSVDNYR-PISILP 426
>SB_25299| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)
Length = 407
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 53 AAVPFAKPSVIAPVGLAGWAGHLSAPWGSHIATPLVAAAPVLGAHNYRGPLSLPP 217
AA P PS+ + + G A W P+ A L NYR P+S+ P
Sbjct: 61 AAAPTIAPSLTKIINQSIKTGRFPARWKEAKVCPIYKAGDRLSVDNYR-PISILP 114
>SB_12038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 53 AAVPFAKPSVIAPVGLAGWAGHLSAPWGSHIATPLVAAAPVLGAHNYRGPLSLPP 217
AA P PS+ + + G A W P+ A L NYR P+S+ P
Sbjct: 61 AAAPAIAPSLTKIINQSIKTGRFPARWKEAKVCPIYKAGDRLSVDNYR-PISILP 114
>SB_6358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 27.9 bits (59), Expect = 5.0
Identities = 33/113 (29%), Positives = 48/113 (42%)
Frame = -2
Query: 486 AACPKPQ*PTGPASPSGAIGAWATKRAAGQSTRAT*DHAAAGARTAERFFKRCTPPCSRA 307
+ CP PQ PT PAS G + ++ + + T+A D+ R + +K RA
Sbjct: 225 SVCP-PQTPTAPASTGGDVQSF--RLQVIRDTQAGLDNEITHYRQVRKKYK-------RA 274
Query: 306 FPVK*TARSWFTLRVSSGLPSAAKILAGCHGGNERGPL*LCAPSTGAAATKGV 148
F V + VSSG+ + A AG + + AP TG A GV
Sbjct: 275 FAVT------HAVSVSSGIAAGALSSAGIGASLSGIGVLIGAPLTGVAVLVGV 321
>SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)
Length = 564
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 74 PSVIAPVGLAGWAGHLSAPWGSHIATPLVAAAPVLGAH 187
PS P G + W + AP+ + + TPL AP L H
Sbjct: 102 PSRYTPHGRSSWLAN--APYPTPLDTPLTDGAPGLSMH 137
>SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 477 PKPQ*PTGPASPSGAIG 427
P P+ P GPA PSGA G
Sbjct: 127 PGPEGPQGPAGPSGADG 143
>SB_11608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 854
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 415 GRPCTYCSTWAGRSCWSLRFGTRC 486
G PC C+++A S WS G C
Sbjct: 778 GNPCQVCNSFASPSTWSNLEGAPC 801
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,241,190
Number of Sequences: 59808
Number of extensions: 408252
Number of successful extensions: 1461
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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