Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0038
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48371| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_54349| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_50269| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)                   29   2.6  
SB_56826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_48371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 811

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 632 KYNLEGKNKIFISSVHHCLPPLPRQHWSFEPDNFIHH 522
           K  L GK +  +  +H   P   R++W++  DN++ H
Sbjct: 711 KDKLNGKLRSNLIGIHQAYPKYMREYWNYVKDNWLTH 747


>SB_54349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 971

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 545  EPDNFIHHTKTDQLPTAREQSDQHRKRCISVRRPLVSFPSSLL 417
            EP+    HT  D++  A E S    +R + VR+P V F   L+
Sbjct: 927  EPEPETEHTGPDKVTMATETSAPEVRRSVRVRKPPVKFADYLV 969


>SB_50269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 331 ELTTRSLPRTKTVSTPCFSITHQNEHREINDSRKISQKSN 212
           + T+ S+   KT S+PC ++   N    ++DSRK    +N
Sbjct: 801 KFTSGSIANHKTSSSPCLAMFSDNGDDNVDDSRKDGDDNN 840


>SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)
          Length = 728

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 656 SRPHGRYFKYNLEGKNKIFISSVHHCLPPLPRQHWSFEPDNFIHHTKTDQ-LPTAREQS 483
           S P G Y++YN+       I+++H C     R+    EP +F    K  Q   T RE+S
Sbjct: 10  SLPCGNYYEYNVYTAKLSNINTLHLCYQASYRRPLVREPADFSRSVKLGQNAATRREKS 68


>SB_56826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 578 LPPLPRQHWSFEPDNFIHHTKTDQLPTAREQSDQ 477
           LP  P QH  F  D+F+H   + Q   + E   Q
Sbjct: 215 LPESPTQHMEFISDDFVHQESSHQGELSHEDLQQ 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,874,064
Number of Sequences: 59808
Number of extensions: 396836
Number of successful extensions: 1052
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)