Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0002
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30753| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)                 30   1.5  
SB_53752| Best HMM Match : TSP_1 (HMM E-Value=8.5e-11)                 29   2.6  

>SB_30753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +2

Query: 254 KEKIQNLAEETASALKKNVYENYMQFIETATEIS 355
           +E++  + E++    KK VYE Y+ F ETAT+IS
Sbjct: 204 QERLTGIVEKSTETSKK-VYEAYLYFPETATKIS 236


>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
          Length = 543

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +1

Query: 259 ENTKFSRRNRKCPKEKCLRELYAVYRDCDGDIPPRNRNVKLSHLLSEQRSV 411
           EN++F  R RKC +E C       + D D D+ P N + K + +LS+  SV
Sbjct: 485 ENSRFLHRERKCERECCTLVNMLSHDDMD-DVFPNNID-KEASILSDLDSV 533


>SB_53752| Best HMM Match : TSP_1 (HMM E-Value=8.5e-11)
          Length = 635

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 416 VSTERCSLNKCDSLTFLFRGGISPSQS 336
           V T+ C  +KCD L+  F GG+  S S
Sbjct: 422 VETKSCGTDKCDGLSDSFTGGLESSTS 448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,710,626
Number of Sequences: 59808
Number of extensions: 348778
Number of successful extensions: 1033
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)