Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0065
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8228| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   1e-09
SB_44522| Best HMM Match : Ank (HMM E-Value=0)                         30   1.7  
SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_51013| Best HMM Match : GFO_IDH_MocA (HMM E-Value=4.7e-31)          29   4.0  
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)                    28   7.0  

>SB_8228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
 Frame = +3

Query: 540 LLACLATNARLAHLPQYKEKSAKMK-EVPIGLLLYPVLQAADVLIYRGTHVPVGADQIQH 716
           LLA      R     Q + K+ + K    +GL  YPVL AAD+L+YR THVP+G DQ+QH
Sbjct: 5   LLASGVNPDRCILFQQSQSKTNQTKARTCLGLYAYPVLMAADILLYRATHVPIGEDQLQH 64

Query: 717 LQVASQLVK 743
           L++  +L +
Sbjct: 65  LELTRELAR 73


>SB_44522| Best HMM Match : Ank (HMM E-Value=0)
          Length = 275

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = -2

Query: 498 RMCSVLDQYRLLINMLLVPRYCFVILQGSAVLLRSV 391
           R CSV+ QYR  I +  V RYC VI Q    L R V
Sbjct: 76  RYCSVITQYR--IALYRVVRYCSVITQYRIALYRVV 109


>SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 499 SFSPLLQDMQSCAGCLHVWLLMPDWPIYPSIKRRVLR*RKC 621
           S S LL  +    GCLH W  +  + ++ ++  R++R   C
Sbjct: 116 SLSSLLTSLSRRVGCLHFWTFLCPFMLFAAVPYRLMRLCTC 156


>SB_51013| Best HMM Match : GFO_IDH_MocA (HMM E-Value=4.7e-31)
          Length = 336

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -1

Query: 544 SSQHSSACLVTAD*TKNVLCSGSIPLANKYAVSSKILFCNTSGFCCAVKE--CKSAINSV 371
           +S H   C++  +  K+V+C   I L  K A         T G  C  K+  CK  I+++
Sbjct: 78  NSTHKELCILALNHGKHVICEKPITLNLKEA-QEVFALATTKGLFCMEKQLKCKDTIDTI 136


>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 354 QQGNDLTLFIADLHSLTAQQNPEVLQNNILELTAYLLASGIDP 482
           +Q   L   IAD+H   + Q P V + N L+    L   G+DP
Sbjct: 73  KQSEKLENKIADIHRSLSGQVPSVAEKNFLDKVKSLDMYGVDP 115


>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
          Length = 1136

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 303 LHVGNYFGAIRRCVRLQQQGNDLTLFIADLHSLTAQQNPEV 425
           +H+ N+    RRC+ L+    D+  F+A+L ++   +N  V
Sbjct: 148 VHIVNFLEYNRRCIILKTSELDVPNFVAELLTMVTSENEYV 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,210,681
Number of Sequences: 59808
Number of extensions: 485575
Number of successful extensions: 1114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)