Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0031
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   2e-06
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.46 
SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)               30   0.61 
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   28   1.9  
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)                 27   4.3  
SB_57962| Best HMM Match : Glyco_hydro_35 (HMM E-Value=1.9e-19)        27   5.7  
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      26   7.5  
SB_4701| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.5  
SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_47922| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = +3

Query: 135 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDE 257
           CC C+ VR GTI+LG  HLF+H+  + VLA ++  P + +E
Sbjct: 20  CCCCMDVRIGTIVLGFCHLFIHIAGVVVLAQMLLHPEVYEE 60


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 141 FCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDE 257
           FCL +      LG++HLF  L+ + V  A++ D   +DE
Sbjct: 494 FCLKIFGTGKKLGTYHLFSSLIIMSVFVAVIVDNLEIDE 532


>SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1252

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -3

Query: 321 AVHLQCAPHCSTNSLGMTHGPVHPAIEDHAQSLLKLLVPLGA 196
           +VHLQ  P    N +   H  V P I  HAQ  L+L VP G+
Sbjct: 299 SVHLQWKPPFKPNGVIGYHVDVWPTINGHAQQ-LRLSVPHGS 339


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 146 PTCSDWHNYSGIMAPFPAP 202
           P C DW  Y GI AP  AP
Sbjct: 14  PACYDWCCYGGISAPTQAP 32


>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1127

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 70  KCSRVSSRICTDYISNRS 17
           K SRVS R CT YIS+ S
Sbjct: 942 KISRVSQRSCTSYISSSS 959


>SB_57962| Best HMM Match : Glyco_hydro_35 (HMM E-Value=1.9e-19)
          Length = 215

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 279 LGMTHGPVHPAIEDHAQSLLKLLVPLGAGKGAMI 178
           L  T+GP   A+E +   L  LL PL   +G  I
Sbjct: 156 LRSTYGPFMEAVEKYFSKLFALLTPLQFSRGGPI 189


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 306 CAPHCSTNSLGMTHGPVHPAIEDH 235
           C P C+T S  M+ GP+ P    H
Sbjct: 120 CTPSCATPSSVMSPGPISPDFFGH 143


>SB_4701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 214 PSATRCRKRCHDPRIIVPVRTCRQKQHSHSLPRSLPNLGWN 92
           PS  +  K  H P   +  +    +  +H LP+S  N+ WN
Sbjct: 69  PSPNQKGKMPHPPNQSLRKKRLVPQLQNHQLPKSFQNVKWN 109


>SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -2

Query: 199 CRKRCHDPRIIVPVRTCRQKQHSHSLPRSLP 107
           C + CHD    V  R C  K      P SLP
Sbjct: 107 CNRVCHDKTGEVCNRVCHDKTGEKKAPDSLP 137


>SB_47922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 345 FPHLTVVWAVHLQCAPHCS 289
           F H  +++ VHLQ  PH S
Sbjct: 220 FKHAAILFTVHLQMEPHSS 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,720,995
Number of Sequences: 59808
Number of extensions: 264362
Number of successful extensions: 588
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)