Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060155.seq
(692 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_44509| Best HMM Match : EMI (HMM E-Value=4.2) 31 0.89
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6) 31 0.89
SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) 31 1.2
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54) 29 4.7
SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 4.7
SB_18662| Best HMM Match : Toxin_27 (HMM E-Value=2) 28 6.2
SB_17494| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
>SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1413
Score = 31.9 bits (69), Expect = 0.51
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +2
Query: 443 TPELADFVFIFDHTEKMGXKM-ATDRHRRLQATTQQFQRAK---KXRLAGAXPRQXWRX* 610
TP L DF +++ K K A +R+ + F + + RLAGA P Q WR
Sbjct: 310 TPNLIDFAIVYEAFYKHHKKYSAMSALKRVPSIEDNFYKDRCFADQRLAGANPFQIWRVT 369
Query: 611 RELRNSRLALXGVY-SLXNR 667
R N + +Y L NR
Sbjct: 370 RSSANVGVGWDTLYEKLLNR 389
>SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 31.5 bits (68), Expect = 0.67
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Frame = +2
Query: 257 LEKKNINYILNVMPVMQDERKMSKRKKKVINNNKY---ILFNSWYTKIKQPEWPSSPAMW 427
+E K + Y V +DE K+ RK+ + +Y ILFN++ ++ +W S + W
Sbjct: 26 IEAKTMKYKYGCSDVPRDE-KLDLRKRSLYYLERYFYFILFNTYLNMERRSKWDRSFSQW 84
Query: 428 DLVKNTPELADFVFIFDHTEKMGXKMATDRHRRLQATTQQFQRAKKXR 571
E+A ++D + G RL+A +++ + + +
Sbjct: 85 -----MTEVASSAGVYDILDNFGFHDFEKTEERLRALRWRWRESYRGK 127
>SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)
Length = 782
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/62 (22%), Positives = 33/62 (53%)
Frame = +1
Query: 1 RHESKRKVCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPCAKM 180
R+ +++ C + +++ I+++ Q+ R +K+ K+ + TC +LR CA +
Sbjct: 64 RYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVCAVV 123
Query: 181 KS 186
+S
Sbjct: 124 RS 125
>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
Length = 984
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/62 (22%), Positives = 33/62 (53%)
Frame = +1
Query: 1 RHESKRKVCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPCAKM 180
R+ +++ C + +++ I+++ Q+ R +K+ K+ + TC +LR CA +
Sbjct: 831 RYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVCAVV 890
Query: 181 KS 186
+S
Sbjct: 891 RS 892
>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 139
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 293 MPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK 394
+PV +++ + K NN KY L WY+K++
Sbjct: 7 LPVQNQAKRLRTWRSKTRNNTKYKLICIWYSKVR 40
>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
Length = 710
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 206 RFQFIQQLFIFAHGRSFCRRLLLRHVYH 123
RF Q I+AH SF +R+LLR + H
Sbjct: 22 RFPRNPQKLIYAHQNSFKKRILLRRIEH 49
>SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 368
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 379 PTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLF 263
P N+ +++ +L A + + HDR + E N+LF
Sbjct: 313 PREVHNILLLMGYLNSALNPYMYSFHDRQFKEAFKNILF 351
>SB_18662| Best HMM Match : Toxin_27 (HMM E-Value=2)
Length = 253
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 159 TAAVCKNEKLLN-KLESSSYNKSNMDQLIAIVNSWKKRTLTISST*CLSCRTNAKCPNAR 335
T+ KN+ N + + ++ N++ + IAI ++W+K+ +TI S N C A
Sbjct: 57 TSKFLKNKTSENWENKRAARNEATRQRRIAIKHNWRKQCVTIDDQLNFSTHINEICRRAS 116
Query: 336 RR 341
+R
Sbjct: 117 QR 118
>SB_17494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = -3
Query: 207 SIPVYSTTFHFCTRPQFL*KIVAPACLPCLIFVNL*NDPLVFLMIYFFNAQQPGNSFVMK 28
S+PV S F TRP ++ + + +P ++ + N +++++I + N FVM
Sbjct: 33 SVPVSSLHEEFATRPPWVTGLESTVYIPIVLTAFIGNSIVLWILIRNRRLRTIPNLFVMS 92
Query: 27 THLTLRLVP 1
L+ L+P
Sbjct: 93 LALSDVLLP 101
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,895,868
Number of Sequences: 59808
Number of extensions: 440726
Number of successful extensions: 1088
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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