Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060149.seq
(680 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 177 9e-45
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 171 3e-43
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 4e-43
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 150 9e-37
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 99 3e-21
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 6e-15
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 56 4e-08
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_56988| Best HMM Match : DUF229 (HMM E-Value=2e-06) 33 0.28
SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5) 30 1.5
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015) 29 2.6
SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06) 29 2.6
SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24) 29 4.6
SB_33942| Best HMM Match : Ribosomal_L37e (HMM E-Value=6.2) 28 6.1
SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05) 28 6.1
SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05) 28 6.1
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_28106| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 177 bits (430), Expect = 9e-45
Identities = 90/128 (70%), Positives = 103/128 (80%)
Frame = +3
Query: 255 DSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILT 434
DSQRQATKDAGTI+GLNVLRIINEPTAAAIAYGLDKK ERNVLI+DLGGGTFDVS+LT
Sbjct: 152 DSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLIYDLGGGTFDVSVLT 211
Query: 435 IEDGIFXVKSTAGDTHLGXEDFEQSMVYHFVQEFKXEYQKGLRYQQESSLGVFVLXVKRA 614
IEDGIF VKSTAGDTHLG EDF+ MV HFV++FK +Y+K + + ++ +RA
Sbjct: 212 IEDGIFEVKSTAGDTHLGGEDFDNKMVDHFVKQFKQKYKKDIT-PNKRAMRRLRTACERA 270
Query: 615 KXXLLSST 638
K L SST
Sbjct: 271 KRTLSSST 278
Score = 130 bits (314), Expect = 1e-30
Identities = 58/82 (70%), Positives = 69/82 (84%)
Frame = +1
Query: 7 EAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMK 186
+AKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+SSMVLTKMK
Sbjct: 69 DAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISSMVLTKMK 128
Query: 187 ETAEAYLGKTVQNAVITVPAYF 252
ETAEAYLG V +AV+TVPAYF
Sbjct: 129 ETAEAYLGAKVTDAVVTVPAYF 150
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 171 bits (417), Expect = 3e-43
Identities = 87/129 (67%), Positives = 103/129 (79%), Gaps = 1/129 (0%)
Frame = +3
Query: 255 DSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILT 434
DSQRQATKDAGTI+GLNVLR+INEPTAAA+AYGLDK +GE+NVLIFDLGGGTFDVSILT
Sbjct: 152 DSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIFDLGGGTFDVSILT 211
Query: 435 IEDG-IFXVKSTAGDTHLGXEDFEQSMVYHFVQEFKXEYQKGLRYQQESSLGVFVLXVKR 611
I+DG +F VKSTAGDTHLG EDF+ +V HFV EFK +Y+K + + ++ +R
Sbjct: 212 IDDGSLFEVKSTAGDTHLGGEDFDNRLVNHFVAEFKRKYKKDMS-KNSRAMRRLRTACER 270
Query: 612 AKXXLLSST 638
AK L SST
Sbjct: 271 AKRTLSSST 279
Score = 131 bits (316), Expect = 6e-31
Identities = 60/82 (73%), Positives = 72/82 (87%)
Frame = +1
Query: 7 EAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMK 186
+AKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+SSMVL KMK
Sbjct: 69 DAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSMVLGKMK 128
Query: 187 ETAEAYLGKTVQNAVITVPAYF 252
ETAEAYLG+ V +AVITVPAYF
Sbjct: 129 ETAEAYLGQKVTSAVITVPAYF 150
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 171 bits (416), Expect = 4e-43
Identities = 89/128 (69%), Positives = 101/128 (78%)
Frame = +3
Query: 255 DSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILT 434
DSQRQATKDAG ISGLNVLRIINEPTAAAIAYGLDKK ERNVLIFDLGGGTFDVS+L+
Sbjct: 245 DSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFDLGGGTFDVSVLS 304
Query: 435 IEDGIFXVKSTAGDTHLGXEDFEQSMVYHFVQEFKXEYQKGLRYQQESSLGVFVLXVKRA 614
IEDGIF VKST GDTHLG EDF+ +MV FV++FK +Y+K + + +L +RA
Sbjct: 305 IEDGIFEVKSTHGDTHLGGEDFDNNMVDFFVKQFKQKYKKDIT-PNKRALRRLRTACERA 363
Query: 615 KXXLLSST 638
K L SST
Sbjct: 364 KRTLSSST 371
Score = 107 bits (256), Expect = 1e-23
Identities = 60/107 (56%), Positives = 70/107 (65%), Gaps = 25/107 (23%)
Frame = +1
Query: 7 EAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV--------- 159
+AKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 69 DAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVNEAGRPKV 128
Query: 160 ----------------SSMVLTKMKETAEAYLGKTVQNAVITVPAYF 252
SSMVL KMKETAEAYLG V +AV+TVPAYF
Sbjct: 129 KVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYF 175
Score = 54.4 bits (125), Expect = 8e-08
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = +1
Query: 154 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAYF 252
++SSMVL KMKETAEAYLG V +AV+TVPAYF
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYF 243
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 150 bits (364), Expect = 9e-37
Identities = 68/103 (66%), Positives = 89/103 (86%)
Frame = +3
Query: 255 DSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILT 434
D+QRQATKDAG I+GL V+RIINEPTAAAIAYG+DKK GE+N+L+FDLGGGTFDVS+LT
Sbjct: 850 DAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK-EGEKNILVFDLGGGTFDVSLLT 908
Query: 435 IEDGIFXVKSTAGDTHLGXEDFEQSMVYHFVQEFKXEYQKGLR 563
I++G+F V +T GDTHLG EDF+Q+++ HF++ +K + K +R
Sbjct: 909 IDNGVFEVVATNGDTHLGGEDFDQNVMEHFIKLYKKKKGKNIR 951
Score = 110 bits (264), Expect = 1e-24
Identities = 53/91 (58%), Positives = 68/91 (74%)
Frame = +1
Query: 7 EAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMK 186
+AKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+MVLTKMK
Sbjct: 767 DAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAMVLTKMK 826
Query: 187 ETAEAYLGKTVQNAVITVPAYFKTLKDKPQK 279
ETAEAYLGK V +AV+TVPAYF + + K
Sbjct: 827 ETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 857
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 99.1 bits (236), Expect = 3e-21
Identities = 47/105 (44%), Positives = 68/105 (64%)
Frame = +3
Query: 261 QRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIE 440
QR AT A +++G+ VLR+INEPTAAA+AYGL KK G NV++ DLGGGT DVS+L I+
Sbjct: 184 QRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMVVDLGGGTLDVSLLNIQ 242
Query: 441 DGIFXVKSTAGDTHLGXEDFEQSMVYHFVQEFKXEYQKGLRYQQE 575
G+F + AG+ LG +DF + + +Q + + L ++
Sbjct: 243 GGMFVTMAMAGNNRLGGQDFNARFMQYLLQLIHKRFNRQLTCSED 287
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +1
Query: 4 HEAKRLIGRKFEDATVQADMKHWPFEVVSDG-GKPKIKVAYKGEDKTFFPEEVSSMVLTK 180
++AKR IG+ F + K + F V +D G V KG PEE+ V+ K
Sbjct: 97 YDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIGGYVIKK 156
Query: 181 MKETAEAYLGKTVQNAVITVPAYF 252
++ AE L TV AV++VPA F
Sbjct: 157 LRTMAERNLTTTVTKAVMSVPAEF 180
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 78.2 bits (184), Expect = 6e-15
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Frame = +3
Query: 255 DSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE---RNVLIFDLGGGTFDVS 425
D QR+ DA +GLN LR++N+ TA ++AYG+ K+ RNV+ D+G + V
Sbjct: 209 DRQRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNVVFVDIGHSSLQVC 268
Query: 426 ILTIEDGIFXVKSTAGDTHLGXEDFEQSMVYHFVQEFKXEYQ 551
I G V STA + +LG DF+ +V HF QEFK +Y+
Sbjct: 269 ITAFLKGQLKVLSTAVEPNLGGRDFDYVLVEHFAQEFKTKYK 310
Score = 70.9 bits (166), Expect = 9e-13
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 13 KRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKE 189
KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V +M+ T++K
Sbjct: 127 KRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVMAMLFTRLKT 186
Query: 190 TAEAYLGKTVQNAVITVPAYF 252
TAE L V + VI+VP+Y+
Sbjct: 187 TAEIALKTKVTDCVISVPSYY 207
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 72.1 bits (169), Expect = 4e-13
Identities = 29/54 (53%), Positives = 42/54 (77%)
Frame = +3
Query: 384 VLIFDLGGGTFDVSILTIEDGIFXVKSTAGDTHLGXEDFEQSMVYHFVQEFKXE 545
+ ++DLGGGTFD+SIL I+ G+F VK+T GDT+LG EDF+ +++ + EFK E
Sbjct: 2 IAVYDLGGGTFDISILEIQKGVFEVKATNGDTYLGGEDFDNTLLKFLIAEFKKE 55
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/57 (45%), Positives = 40/57 (70%)
Frame = +1
Query: 109 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFKTLKDKPQK 279
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVPA+F + + K
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQRQATK 58
Score = 50.4 bits (115), Expect = 1e-06
Identities = 37/69 (53%), Positives = 40/69 (57%), Gaps = 26/69 (37%)
Frame = +3
Query: 255 DSQRQATKDAGTISGLNVL------------------------RIINEPTAAAIAYGLDK 362
D+QRQATKDAGTI+GL+VL RIINEPTAAAIAYGLDK
Sbjct: 51 DAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGLDK 110
Query: 363 K--GTGERN 383
G ERN
Sbjct: 111 ARGGKAERN 119
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 46.8 bits (106), Expect = 2e-05
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Frame = +3
Query: 258 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFDLGGGTFDVS 425
++R+A A + GLNVL+I+N TA A+ YGL ++ T E++ + +D+G + +
Sbjct: 119 AERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMGASSTVAT 178
Query: 426 IL------TIEDGI------FXVKSTAGDTHLGXEDFEQSMVYHFVQEFKXEYQ-KGLRY 566
I+ T + GI +K D LG + + H VQ FK Y+ KG
Sbjct: 179 IVGYSMTKTKDRGISETAPQLVIKGIGFDRTLGGHAIDMRLRDHLVQLFKKNYKFKGEVT 238
Query: 567 QQESSLGVFVLXVKRAKXXL 626
Q ++ F R K L
Sbjct: 239 QSSRAMAKFYKEALRVKQVL 258
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 103 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYF 252
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP +F
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFF 116
>SB_56988| Best HMM Match : DUF229 (HMM E-Value=2e-06)
Length = 286
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 203 ISAKLCRM-QLSRFPRTSRLSKTSHKR-CRYHLRLERSPNH 319
+SAKLC + LS+ R + HKR C Y +++E SP H
Sbjct: 198 LSAKLCHVVTLSKIVRALQTHSHLHKRQCSYQIQIETSPAH 238
>SB_4173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 743
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 203 ISAKLCRM-QLSRFPRTSRLSKTSHKR-CRYHLRLERSPNH 319
+SAKLC + LS+ R + HKR C Y +++E SP H
Sbjct: 655 LSAKLCHVITLSKIVRALQTHSHLHKRQCSYQIQIETSPAH 695
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = -2
Query: 526 TKWXTMDCSKSSXPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLSRP* 347
+ W +C KS K P +S + SS TSK PP + +ST SP
Sbjct: 1244 SSWMVTNCQKSC--KRCPPEPPTSSIMQSSSNIPTTSKTPPSSTCLSTAVSPAAGADSNN 1301
Query: 346 AIAAAVGSLMIRRTF 302
A+ A+ SL++ F
Sbjct: 1302 AVNVAISSLVLPSLF 1316
>SB_27085| Best HMM Match : Filamin (HMM E-Value=1.5)
Length = 634
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 384 VLIFDLGGGTFDVSILTIEDGIFXVK 461
V I+DLG GT++++IL E G++ ++
Sbjct: 319 VPIYDLGNGTYEMAILFHEPGVYSIR 344
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +3
Query: 381 NVLIFDLGGGTFDVSILTIEDGIFXVKSTAGDTHLGXEDFEQSMVYHFVQEFKXEYQKGL 560
+ LI D G+F VS E+GI + GD H+ F+ ++ Y GL
Sbjct: 1428 DTLITDNQDGSFGVSYTPFEEGIHDLAVKFGDDHIPGSPFKVDVLPVTDPSKCKAYGPGL 1487
Query: 561 RYQQESSLGVFVLXVKRA 614
++ Q + F + K A
Sbjct: 1488 QHAQLNKPADFTVETKGA 1505
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 333 AAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFXVKSTAGDTHLGXEDF 500
A A L +G E + D G GT VS + +E+G + + D H+ F
Sbjct: 1505 AGAGGLSLAIEGPSEAKLTCQDNGDGTCSVSYIPVEEGDYDIHIKFADEHIPGSPF 1560
>SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)
Length = 600
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 390 IFDLGGGTFDVSILTIEDGIFXV 458
+FDLG G+++V L +E G++ V
Sbjct: 311 VFDLGNGSYEVLFLVMEPGVYRV 333
>SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06)
Length = 799
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 481 WVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVP 365
+++PA+ S +PS V +D VP P I+ + VP
Sbjct: 267 YLTPAISTQSTLPSGTVTLDQHNVPHPSGTITLDQHNVP 305
>SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)
Length = 1497
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 170 CLRK*RKLPKLISAKLCRMQLSRFPRTSRLSKTSHKRCRYHLRLERSPNH 319
C K R L +++ L Q + T++L H R R R R+PNH
Sbjct: 1205 CQHKWRNLKEVLVTSLPERQTGQRNLTNKLLMNLHVRLRRWRRESRAPNH 1254
>SB_33942| Best HMM Match : Ribosomal_L37e (HMM E-Value=6.2)
Length = 226
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 170 CLRK*RKLPKLISAKLCRMQLSRFPRTSRLSKTSHKRCRYHLRLERSPNH 319
C K + L +++ L Q+ + T++L H R R R R+PNH
Sbjct: 95 CQHKWKNLKEVLVPSLPERQMGQRNLTNKLLMNLHVRLRRWRRESRAPNH 144
>SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 809
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 170 CLRK*RKLPKLISAKLCRMQLSRFPRTSRLSKTSHKRCRYHLRLERSPNH 319
C K + L +++ L Q+ + T++L H R R R R+PNH
Sbjct: 156 CQHKWKNLKEVLVPSLPERQMGQRNLTNKLLMNLHVRLRRWRRESRAPNH 205
>SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 983
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 170 CLRK*RKLPKLISAKLCRMQLSRFPRTSRLSKTSHKRCRYHLRLERSPNH 319
C K + L +++ L Q+ + T++L H R R R R+PNH
Sbjct: 330 CQHKWKNLKEVLVPSLPERQMGQRNLTNKLLMNLHVRLRRWRRESRAPNH 379
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -1
Query: 197 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRP 24
S F+F ST + +S +KV+ SPL + + P+ G S C V + + P
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNVQNLSRCP 1165
>SB_28106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1206
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +2
Query: 122 IRVKTKPFSPRKSVPWCLRK*RKLPKLISAKLCRMQLSRFPRTSRLSKTSHKRCRYHLRL 301
+ +K FS + C K L +++ L Q + T++L H R R R
Sbjct: 676 VHLKVCHFSSQVVDTACQHKWSNLKEVLVPSLPERQTGKRKLTNKLLMNLHVRLRRWRRE 735
Query: 302 ERSPNH 319
R+PNH
Sbjct: 736 SRAPNH 741
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,628,279
Number of Sequences: 59808
Number of extensions: 428421
Number of successful extensions: 1400
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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