Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060139.seq
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53257| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   1e-16
SB_55278| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   4e-09
SB_11345| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)            29   2.5  
SB_3525| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  

>SB_53257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 42/99 (42%), Positives = 58/99 (58%)
 Frame = +3

Query: 204 LGLSFEIAEGGFLDIDV*Y*ALMATSFIKQRGSHLVFIHFSAPTAGKYTYCFSNKMSSMT 383
           +GL FE+AEGGFLDIDV                      F+A   G Y YCFSNKMS+MT
Sbjct: 1   MGLIFEVAEGGFLDIDVKIIGPDQKVIYSGERETSGKYTFAAHMDGTYNYCFSNKMSTMT 60

Query: 384 PKVVMFNLEIGEPQTKSGNENEADHNKLEDMIKELATTL 500
           PKV+ F+++IGE    +  E+ A H+KL +M+ +L+  +
Sbjct: 61  PKVLKFSMDIGEAPKDTSKEDNAGHDKLSEMVSQLSEAM 99



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 22/30 (73%), Positives = 28/30 (93%)
 Frame = +2

Query: 509 KHDQEYMQVRDRIHRSINESTNSRVVMWVY 598
           KH+QEYM+VR+RIHRSIN++TNSRVV W +
Sbjct: 103 KHEQEYMEVRERIHRSINDNTNSRVVWWSF 132


>SB_55278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
 Frame = +3

Query: 99  VVTLLNLVSNAYSYTVTVDAHAEECFYENVEADTKLGLSFEIAEGGFLDIDV*Y*ALMAT 278
           V+ L  ++ +    T  ++ +A +CFYE ++ D K  L F++  GG  D+DV    +   
Sbjct: 13  VLALSCILVSCTELTFELEDNARQCFYEELKKDAKATLEFQVITGGNYDVDVILYDINEK 72

Query: 279 SFIKQRGSHLVFIHFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQ--TKS-GNENE 449
                +        F+    G Y +CFSN+ S+++ K V F+ + GE    TK+ GN + 
Sbjct: 73  ELYSVQKKQYDSHTFTVEQPGIYKFCFSNEFSTISHKTVYFDFQSGEETQLTKTMGNHHT 132

Query: 450 A 452
           A
Sbjct: 133 A 133


>SB_11345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 22/146 (15%)
 Frame = +3

Query: 138 YTVTVDAHAEECFYENVEADTKLGLSFEIA--------------------EGGFLDIDV* 257
           +T  VD    +CFYE ++ +  L + +++                     EGG  D+D+ 
Sbjct: 35  FTFRVDPGKRDCFYETIKRNVTLDVEYQVCAYVYKRHYCGNGMFDNNLVIEGG--DLDIG 92

Query: 258 Y*ALMATSFIKQRGSHLVFIHFSAPTA--GKYTYCFSNKMSSMTPKVVMFNLEIGEPQTK 431
           +     +  I     H      S  T   G+Y +CF N  S++  K +  +L +      
Sbjct: 93  FTLQAPSGKIAIEDGHRTDEAHSLVTEEEGEYEFCFDNTFSTVASKAIFADLGVDFEDDI 152

Query: 432 SGNENEADHNKLEDMIKELATTLRTI 509
                  D N  ED+      TL  +
Sbjct: 153 QKMIGIKDENLEEDLHDRFVRTLENV 178


>SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)
          Length = 348

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 497 IKNYKHDQEYMQVRDRIHRSINESTNSRVVMW 592
           ++    +Q Y + R+   R  +ESTN RV+ W
Sbjct: 288 VEQISKEQNYQRFREERFRMTSESTNQRVLWW 319


>SB_3525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 275 CHQGLVLYINI*ETTFCYFKR*SQFGIGFYIFVKALFGMCINCDC 141
           C    V +  I E  +C+FKR   +G    I  K   G+C+NC C
Sbjct: 4   CQSQTVRFKTI-EEMWCFFKR---YGRYIVISSKMCTGICLNCIC 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,454,044
Number of Sequences: 59808
Number of extensions: 387545
Number of successful extensions: 843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)