Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060137.seq
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49934| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_20827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_17923| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.4  

>SB_49934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 556 RS*CPRVLGRRRTSSRAVRTNIVQIXVSFGEM 461
           R+ CP   GR R+S  AVR++   +  SFGE+
Sbjct: 8   RATCPATTGRNRSSRNAVRSSRDSLLSSFGEL 39


>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1250

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 374 NSKVIIVEGPVAAGKTAFAASLADDLGMK 460
           NS +++V GPV  GKT+  +++  +L ++
Sbjct: 440 NSDLVLVTGPVGCGKTSLLSAILGELSVR 468


>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 812

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = -1

Query: 130 CETVKY*IISND*VFES*IEVFILNKSLFLTSNQYITTN 14
           CE+++  ++++  +FE+ IE   + KS+F + +Q+  TN
Sbjct: 73  CESLEEAVVNSGLIFEATIENLEVKKSVFKSISQFCRTN 111


>SB_20827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 362 CGSCGRLXAQPSVVLVHI 309
           CG CG+  AQ SV+ VH+
Sbjct: 306 CGQCGKAFAQKSVLQVHV 323


>SB_17923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 443 DDLGMKHFPEANXDLHYIRP 502
           D+ G+ H PEA   L+YIRP
Sbjct: 201 DEEGIPHKPEAQKHLYYIRP 220


>SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 374 NSKVIIVEGPVAAGKTAFAASLADDLGMK 460
           +++V++V GPV  GKTA   ++  ++ +K
Sbjct: 506 SNQVVMVTGPVGCGKTALLMAILKEIPLK 534


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,485,688
Number of Sequences: 59808
Number of extensions: 394295
Number of successful extensions: 879
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)