Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060136.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)                   30   1.5  
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)                    30   1.5  
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)             28   6.2  
SB_22790| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
          Length = 1105

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 107 KKTPPTEPRYANTTLSS--QEQITSTVPDILANSL 9
           K  PPT    A++TL    +  IT TVP ILAN L
Sbjct: 250 KSAPPTTAVVASSTLHKLIEASITKTVPTILANML 284


>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
          Length = 763

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 107 KKTPPTEPRYANTTLSS--QEQITSTVPDILANSL 9
           K  PPT    A++TL    +  IT TVP ILAN L
Sbjct: 113 KSAPPTTAVVASSTLHKLIEASITKTVPTILANML 147


>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
          Length = 488

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 140 H*SNFGWNTGIKKTPPTEPRYANTTLSSQEQITSTVPDI 24
           H +  GW TG+   PP    Y+  TL++   I +T  ++
Sbjct: 390 HWNQEGWKTGLCSVPPVGQPYSLLTLANNSCIKNTFVEL 428


>SB_22790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +2

Query: 8   RASWLKYLEQSKLSAPESLVWCWHSEVRWAASFL-YRYSNQSCFSETXNSAWKSVNGTLR 184
           +ASW           P   V+C   +  W   F  YR+  + C+    NS W  +N T +
Sbjct: 296 KASWRNVTFPEVARQPYE-VYCRWWQYDWRNMFPPYRHEPRPCWGP--NSGWPELNVTFK 352

Query: 185 SAE*SMSRFPMVARSASSL 241
            A   +   P VAR +S++
Sbjct: 353 LAIIFILGQPAVARESSAV 371


>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2126

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 207  LDIDHSALLKVPFTDFHAEFXVSLKQLWLEYRYKKDAAHRTSLCQHHTKLSGAD 46
            L+ DH  LLK+    +H+   V L+  +    +K  A     L  H T+  G D
Sbjct: 1324 LEFDHKNLLKIHMDCYHSNMEV-LQCYYCGASFKHRAEFLDHLTSHETETKGMD 1376


>SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 359 NSSKFHLYYIVYDIKESI*IVRKEILITFKWVPSHPELRAM 237
           + S+      V ++K SI I     ++TF W+P  P  RA+
Sbjct: 533 HDSRTTFILFVRNVKYSILIQTTSFMMTFTWIPIFPTRRAV 573


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,693,964
Number of Sequences: 59808
Number of extensions: 355709
Number of successful extensions: 766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)