Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060133.seq
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             113   9e-26
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          101   7e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 80   1e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.37 
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.64 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   0.85 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.0  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   2.0  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)                  29   4.5  
SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               28   6.0  
SB_33453| Best HMM Match : BRF1 (HMM E-Value=1.4)                      28   7.9  
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     28   7.9  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  113 bits (273), Expect = 9e-26
 Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
 Frame = +2

Query: 260 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 439
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 440 TREHALLAFTLGVKQLIVGVNK--MIPLNHHTVSP 538
           TREHA+L  +LGV QLIV +NK  M+ L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  101 bits (241), Expect = 7e-22
 Identities = 43/84 (51%), Positives = 61/84 (72%)
 Frame = +2

Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 436
           T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268

Query: 437 QTREHALLAFTLGVKQLIVGVNKM 508
           QTREHA+LA T GVK L++ VNKM
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNKM 292



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 18/43 (41%), Positives = 31/43 (72%)
 Frame = +3

Query: 129 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGS 257
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGN 208



 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/34 (38%), Positives = 25/34 (73%)
 Frame = +1

Query: 496 SKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYQP 597
           +K +D T   ++E R+EEIK +++ ++KK+G+ P
Sbjct: 290 NKMDDPTVK-WNEERYEEIKVKLTPFLKKVGFNP 322


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 191
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +2

Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 367
           TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 24  TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +3

Query: 189 MGKGSFKYAWVLDKLKAERERG 254
           MGKGSFKYAWVLDKLKAERERG
Sbjct: 1   MGKGSFKYAWVLDKLKAERERG 22


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 302 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 45  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 296 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 23/62 (37%), Positives = 28/62 (45%)
 Frame = +3

Query: 69   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 249  RG 254
            RG
Sbjct: 1987 RG 1988


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +2

Query: 311 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 490
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 491 VGVNKM 508
           +  NK+
Sbjct: 123 ILQNKI 128


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 308 IIDAPGHRDFIKNMITGTSQADCAVLIV 391
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 302 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 60  THINIVVIGHVDSGKSTTTGHLIY 131
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
          Length = 1600

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 472  RCQTAHRRSKQNDSTEPPYSEPRFEEIKK-EVSSYIKKIGYQPS 600
            + + A R SKQ D   P  S+P+ +  +K +VS   KK  YQ S
Sbjct: 966  KTKQASRASKQQDQARPRPSKPQDQASRKTKVSCMTKKDQYQAS 1009


>SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +3

Query: 117 GHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGSQSILLSGSSKLAS 296
           GH      G    T    E + ++M K  F Y ++LDK   E ++ SQ I     + + S
Sbjct: 389 GHSTTSKDGALAETKIATEDKVKKMEKVLFDYRFLLDKSNFELQQHSQHIEAVRKNAVES 448

Query: 297 TMLPSLMLLD--TEISSRT 347
                + L D  TE+ S+T
Sbjct: 449 ITSAIIKLKDFQTEVESKT 467


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +2

Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 397
           T  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 125 TQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_33453| Best HMM Match : BRF1 (HMM E-Value=1.4)
          Length = 412

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 487 HRRSKQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYQPS 600
           H+RSK +  T+P     R +  KK+ S++I +   +P+
Sbjct: 149 HKRSKSSSETDPSSHSKRQKHKKKKSSAHIDESDEEPN 186


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 201 SFKYAWVLDKLKAERER--GSQSILLSGSSKLASTMLPSLM 317
           +++  W++DK +AE +R  GS+   L    K  ST  P+ M
Sbjct: 343 AYRVNWIIDKFRAENQRANGSKGATLEEFFKFLSTRDPADM 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,198,522
Number of Sequences: 59808
Number of extensions: 436601
Number of successful extensions: 1464
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)