Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060123.seq
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)             160   1e-39
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   3e-38
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)             135   3e-32
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)        81   8e-16
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   8e-16
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)             38   0.006
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)              31   0.67 
SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)               31   1.2  
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)                 30   1.5  
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)              29   3.6  
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  

>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score =  160 bits (388), Expect = 1e-39
 Identities = 79/143 (55%), Positives = 97/143 (67%)
 Frame = +1

Query: 259 TITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNI 438
           ++ KTGM+++CGEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+I
Sbjct: 2   SVAKTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDI 61

Query: 439 AAGVHENRNDEEVGAGDQGLMFGLQQMRQKNACR*L*CLHTNSIRKLQSFRRNGRFWWAR 618
           A GVH  R+DE++GAGDQGLMFG               L     ++L   RRNG   W R
Sbjct: 62  AQGVHIGRSDEDLGAGDQGLMFGYATDETDELMPLTVVLAHGLNKRLADCRRNGSLPWVR 121

Query: 619 PDSKNTGLLANMYLPGGATVPHR 687
           PDSK T +       GG  VP R
Sbjct: 122 PDSK-TQVTVEYKFQGGKAVPLR 143


>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  155 bits (376), Expect = 3e-38
 Identities = 79/148 (53%), Positives = 96/148 (64%)
 Frame = +1

Query: 244 KSCIETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQ 423
           K   ET+ KTGM+LLCGEITS A VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL+Q
Sbjct: 66  KVACETVAKTGMILLCGEITSNAVVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQ 125

Query: 424 QSPNIAAGVHENRNDEEVGAGDQGLMFGLQQMRQKNACR*L*CLHTNSIRKLQSFRRNGR 603
           QS +IA GVH  R +E+VGAGDQGLMFG      +        L     +KL  +RR+G 
Sbjct: 126 QSVDIAHGVHVGREEEDVGAGDQGLMFGYATDETEELMPLTVVLAHKMNQKLAEYRRDGT 185

Query: 604 FWWARPDSKNTGLLANMYLPGGATVPHR 687
             WARPDSK T +        G  +P R
Sbjct: 186 LPWARPDSK-TQVTVEYKFEHGRAIPLR 212



 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 36/40 (90%), Positives = 38/40 (95%)
 Frame = +2

Query: 134 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVA 253
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVA
Sbjct: 29  NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVA 68


>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score =  135 bits (327), Expect = 3e-32
 Identities = 73/148 (49%), Positives = 88/148 (59%)
 Frame = +1

Query: 244 KSCIETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQ 423
           K   ET TKTG+VLL GEITS A VDYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +
Sbjct: 87  KVACETATKTGLVLLFGEITSNARVDYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQE 146

Query: 424 QSPNIAAGVHENRNDEEVGAGDQGLMFGLQQMRQKNACR*L*CLHTNSIRKLQSFRRNGR 603
           Q   IA  VH NR D+E+GAGDQGLMFG      +        L      +L   R+   
Sbjct: 147 QVAEIAQTVHLNRRDDEIGAGDQGLMFGYATDETEELMPLTTVLAHKLCARLAECRKGKI 206

Query: 604 FWWARPDSKNTGLLANMYLPGGATVPHR 687
             W  PD K T +  +  L  GA +P R
Sbjct: 207 LPWLLPDGK-TQVTVDYRLERGACIPER 233



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 35/46 (76%), Positives = 36/46 (78%)
 Frame = +2

Query: 116 YDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVA 253
           Y   D   FLFTSESV EGH DKMCDQISDA+LDAHL QDP AKVA
Sbjct: 44  YSTSDCDNFLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVA 89


>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
          Length = 70

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 36/40 (90%), Positives = 38/40 (95%)
 Frame = +2

Query: 134 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVA 253
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVA
Sbjct: 29  NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVA 68


>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 36/40 (90%), Positives = 38/40 (95%)
 Frame = +2

Query: 134 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVA 253
           + FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVA
Sbjct: 9   NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVA 48



 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 32/45 (71%), Positives = 39/45 (86%)
 Frame = +1

Query: 244 KSCIETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSK 378
           K   E++ KTGM+++CGEITS ANVDYQKVVR+T+K IGYDDSSK
Sbjct: 46  KVACESVAKTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSK 90


>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
          Length = 192

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 469 EEVGAGDQGLMFGLQQMRQKNACR*L*CLHTNSIRKLQS-FRRNGRFWWARPDSKN 633
           E+ GAGDQGLMFG     + ++       + + + + QS  RRNG   W RPD+K+
Sbjct: 8   EDQGAGDQGLMFG-YATNETDSLMPAPVYYAHRLVERQSELRRNGTLPWLRPDAKS 62



 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 492 GLDVRFATDETEECMPLTVVLAHKLNQKIAELQ 590
           GL   +AT+ET+  MP  V  AH+L ++ +EL+
Sbjct: 16  GLMFGYATNETDSLMPAPVYYAHRLVERQSELR 48


>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
          Length = 390

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +1

Query: 292 GEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 393
           GEITS  N+D +K+    +   K I YD    G+DY+
Sbjct: 103 GEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139


>SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 18  RGTVWGYISGLTLNSECRRLQK*MDXRK-PTDTVMIWKMDQYFCSH 152
           RG VW  ++GL+ N E     K +  ++ PT+ V++W + + F +H
Sbjct: 416 RGQVWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 461


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 18  RGTVWGYISGLTLNSECRRLQK*MDXRK-PTDTVMIWKMDQYFCSH 152
           RG VW  ++GL+ N E     K +  ++ PT+ V++W + + F +H
Sbjct: 70  RGQVWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 115


>SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)
          Length = 906

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 524 RRMHAVDCSACTQTQSENCRASGEMGDFGGQDQIQKT 634
           RR     C ACT+     CR   +M  FGG  +++++
Sbjct: 487 RRTRCGQCEACTREDCGECRTCKDMKKFGGPGRMKQS 523


>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
          Length = 681

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 508 NRTSSPGLLPQLPRHFCSHAPQQQCLVIVGL 416
           N T+ P + PQ P H  SHA +   ++I G+
Sbjct: 101 NETARPAIAPQEPEHLVSHANKILTVIIQGM 131


>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
          Length = 550

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 327 LIIHVSFGCDFATQ--KHHTGFSYGFNATFASGS*FRCASRIASLIWSHILSG 175
           L  H++F C       + H   S   ++  A  + FRC+ R  S++W H+ +G
Sbjct: 263 LTCHLNFACRVCRTYPRLHVIPSSISDSDLAKVASFRCSGRFPSIVWRHMTNG 315


>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1155

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 65  MPETSKMNGXAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 241
           MP      G +K N  + D  D   +L   +S+    + D++C   +  I  AHL QDPD
Sbjct: 196 MPYGGGKRGKSKKNSSTLDTGDLETWLKGRKSITRVRNHDELCAARALVIGMAHLTQDPD 255


>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 65  MPETSKMNGXAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 241
           MP  +   G +K N  + D  D   +L    S+    + D++C   +  I  AHL +DPD
Sbjct: 241 MPFGAGKRGKSKKNSSTLDTGDLETWLKGKRSITRVRNHDELCAARATVIGMAHLTKDPD 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,250,507
Number of Sequences: 59808
Number of extensions: 546343
Number of successful extensions: 1624
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)