Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060098.seq
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53499| Best HMM Match : Cation_ATPase_C (HMM E-Value=2e-23) 149 2e-36
SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 2e-31
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 132 3e-31
SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_56650| Best HMM Match : AgrB (HMM E-Value=0.57) 29 2.6
SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_11015| Best HMM Match : 7tm_2 (HMM E-Value=0.00048) 29 3.4
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 28 6.0
SB_37175| Best HMM Match : GvpH (HMM E-Value=2.5) 28 6.0
SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07) 28 6.0
SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
>SB_53499| Best HMM Match : Cation_ATPase_C (HMM E-Value=2e-23)
Length = 109
Score = 149 bits (362), Expect = 2e-36
Identities = 66/84 (78%), Positives = 71/84 (84%)
Frame = +3
Query: 255 RKALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIFETALAAFLSY 434
RK LE+TCHTAFFVSIV+VQWADLIICKTRRNS+ QGM N LNFGL FETALAAF SY
Sbjct: 5 RKILEYTCHTAFFVSIVIVQWADLIICKTRRNSLFTQGMTNKFLNFGLFFETALAAFFSY 64
Query: 435 TPGMDKGLRMYPLKFVWWLPAIPF 506
TPGM GLRMYPL + WW PA+PF
Sbjct: 65 TPGMSNGLRMYPLNWQWWFPAMPF 88
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 509 LSIFIYDEIRRFYLRRNPG 565
L I+IYDE RR+ LRR PG
Sbjct: 90 LIIWIYDECRRWILRRYPG 108
>SB_42324| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 132 bits (320), Expect = 2e-31
Identities = 65/100 (65%), Positives = 75/100 (75%)
Frame = +1
Query: 10 SDIMKRQPRNPFTDKLVNERLISMAYGQIGMIQAAAGFFVYFVIMAENGFLPMKLFGIRK 189
SDIMKR PR+P T+KLVNERLISM YGQIG +QA+AGF YFVIMAENGFLP LF IR
Sbjct: 285 SDIMKRMPRDPRTEKLVNERLISMTYGQIGFMQASAGFLTYFVIMAENGFLPGDLFNIRG 344
Query: 190 QWDSKAINDLTDSYGQEWTYRDARRSSLLATPHSSYLLSL 309
W+ K N L DSYGQEW Y A+R L T HS++ +S+
Sbjct: 345 LWEDKTNNTLLDSYGQEWGY--AQRKVLEFTCHSAFFVSI 382
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/40 (87%), Positives = 37/40 (92%)
Frame = +3
Query: 255 RKALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQGMR 374
RK LEFTCH+AFFVSIVVVQWADLIICKTRRNSII Q M+
Sbjct: 367 RKVLEFTCHSAFFVSIVVVQWADLIICKTRRNSIITQKMK 406
Score = 54.8 bits (126), Expect = 6e-08
Identities = 24/44 (54%), Positives = 28/44 (63%)
Frame = +3
Query: 375 NWALNFGLIFETALAAFLSYTPGMDKGLRMYPLKFVWWLPAIPF 506
N L GLIFETALAAFL YTPG+ L +Y L WW +P+
Sbjct: 451 NHILIIGLIFETALAAFLLYTPGLSTALSLYGLNASWWFIGVPY 494
Score = 52.4 bits (120), Expect = 3e-07
Identities = 19/26 (73%), Positives = 24/26 (92%)
Frame = +2
Query: 515 IFIYDEIRRFYLRRNPGGWLEQETYY 592
IF+YDE+RR+ LR+ PGGW+EQETYY
Sbjct: 498 IFVYDEVRRYILRKYPGGWVEQETYY 523
>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 1003
Score = 132 bits (318), Expect = 3e-31
Identities = 60/76 (78%), Positives = 64/76 (84%)
Frame = +3
Query: 255 RKALEFTCHTAFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIFETALAAFLSY 434
RK LE+TCHTAFFVSIV+VQWADLIICKTRRNS+ QGM N LNFGL FETALAAF SY
Sbjct: 829 RKILEYTCHTAFFVSIVIVQWADLIICKTRRNSLFTQGMTNKFLNFGLFFETALAAFFSY 888
Query: 435 TPGMDKGLRMYPLKFV 482
TPGM GLRMYPL +
Sbjct: 889 TPGMSNGLRMYPLNHI 904
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/68 (54%), Positives = 50/68 (73%)
Frame = +1
Query: 106 QAAAGFFVYFVIMAENGFLPMKLFGIRKQWDSKAINDLTDSYGQEWTYRDARRSSLLATP 285
+A+AGFF YFVIMAENGF P LFG+R+QWD K + + DSYGQEW Y ++R L T
Sbjct: 779 KASAGFFTYFVIMAENGFRPSLLFGLRRQWDDKYNHSVVDSYGQEWGY--SQRKILEYTC 836
Query: 286 HSSYLLSL 309
H+++ +S+
Sbjct: 837 HTAFFVSI 844
>SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 658
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 392 KVEGPVAHALVNDRVTAGLADNQVGPLHNDNRYEECGVASK 270
K GP + AD+Q GPLHND++Y + +
Sbjct: 162 KPRGPALNKQAAQTQIQDKADSQYGPLHNDHQYHSLALQDR 202
>SB_56650| Best HMM Match : AgrB (HMM E-Value=0.57)
Length = 246
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +3
Query: 291 FVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIFETALAAFLS 431
F I+ V + DLI KT +N +R AL GLIFET L F +
Sbjct: 102 FTYIISVLYVDLIETKTDQN------VRLSALGIGLIFETFLLTFFA 142
>SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 340 VLQIIKSAHCTTTIDTKNAVWQVNSSALR 254
V+ + C+ DTKN W VNS+ LR
Sbjct: 121 VIHKVNDRECSGVQDTKNIFWSVNSTDLR 149
>SB_11015| Best HMM Match : 7tm_2 (HMM E-Value=0.00048)
Length = 283
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -1
Query: 622 TTVDSDRRCLIISLLFEPAAGVAAQVEAPDLVVDEDGQMNGMAGSHHTN 476
TT R S +++P GV V +PD + D G N + H T+
Sbjct: 13 TTTKLARPSCETSQVYDPFRGVCRVVYSPDKLTDHHGNSNNSSAFHTTS 61
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 239 NGPTVTQGARVYLPHRILRIYCRCAMG 319
+ P++ Q V P R +R+Y RCAMG
Sbjct: 39 DAPSIRQFFGVATPFRGVRVYTRCAMG 65
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 177 EKLHREESVFSHDHEVDEEASRGLDHSD 94
E HR ES+ +DH E AS +D+SD
Sbjct: 1739 EICHRVESISDNDHVDKERASTPIDNSD 1766
>SB_37175| Best HMM Match : GvpH (HMM E-Value=2.5)
Length = 340
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 177 EKLHREESVFSHDHEVDEEASRGLDHSD 94
E HR ES+ +DH E AS +D+SD
Sbjct: 170 EICHRVESISDNDHVDKERASTPIDNSD 197
>SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07)
Length = 487
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +3
Query: 285 AFFVSIVVVQWADLIICKTRRNSIIHQGMRNWALNFGLIFETALAAFLSYTPGMDKG 455
AF S +V++ + +I+CKT R+ ++ G +N FG A A+ +P D G
Sbjct: 63 AFLYSKMVIENSGIIVCKT-RHVVLAGGGKNATTGFGGFGTFAPASPRISSPARDGG 118
>SB_16790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1902
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 171 LHREESVFSHDHEVDEEASRGLDHSDLSVSHRDQPLVNE 55
LH +++V D V E L H D SV H D ++NE
Sbjct: 805 LHEDDTVLQEDDSVLHEDDSVL-HEDDSVLHEDDSVLNE 842
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,210,456
Number of Sequences: 59808
Number of extensions: 483458
Number of successful extensions: 1315
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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