Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0031
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0)                       29   5.1  
SB_2322| Best HMM Match : CAP160 (HMM E-Value=0.04)                    29   5.1  
SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061)                  28   8.9  

>SB_48787| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 1142

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +3

Query: 102 SAQRNLLTGVKLNYYFFNMIAVLNLFILPVVDVFISLL*IYLYCKEYLSTMLKKLKRNLE 281
           SA R     ++L Y+  N++  +         +FI++  +YL  K   + ++K   R L 
Sbjct: 531 SADRKQCLQIELQYFGKNLMYAVPAMGFAGTGIFITIFVVYLLAKHDKTPIVKACGRELA 590

Query: 282 ILFFYSI 302
            L   SI
Sbjct: 591 YLLLVSI 597


>SB_2322| Best HMM Match : CAP160 (HMM E-Value=0.04)
          Length = 496

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 105 AQRNLLTGVKLNYYFFNMIAVLNLFILPVVDVFISLL 215
           A +NLLT  +L Y  F M+A + L I+ + D  +  +
Sbjct: 241 AAKNLLTDTELGYGQFQMVATMLLSIIKISDELLEAI 277


>SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061)
          Length = 608

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 125 RCKA*LLFFQYDCSVELVYTSCC*CVYIIIVNLSLL 232
           RC    L F  DC  EL+ T C  C+ +   N+  L
Sbjct: 451 RCDTINLMFLSDCIDELIQTRCATCIILKRTNIRTL 486


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,756,415
Number of Sequences: 59808
Number of extensions: 382189
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)