Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C11
         (921 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)               207   1e-53
SB_56029| Best HMM Match : SEA (HMM E-Value=4.7)                       30   2.3  
SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)                    30   3.0  
SB_50794| Best HMM Match : Cys_knot (HMM E-Value=2.2)                  30   3.0  
SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  

>SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)
          Length = 224

 Score =  207 bits (505), Expect = 1e-53
 Identities = 102/141 (72%), Positives = 114/141 (80%), Gaps = 2/141 (1%)
 Frame = +2

Query: 383 LSFDKDASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLF 562
           LSFD +AS+AKA+KFI L+ E GI KER+LIKL+STWEGIQAA+ LE+ HGIHCNLTLLF
Sbjct: 2   LSFDVEASVAKALKFIELYKEAGISKERVLIKLSSTWEGIQAARILERDHGIHCNLTLLF 61

Query: 563 SLYQAIACAEAXVTLISPFVGRILDWYVEHT-KKTYEGKEDPGVVSVTKIYNYYKXFGYQ 739
           +  QA+ACAEA VTLISPFVGRI DWYV  T +K YE  EDPGV SVT IYNYYK FGY+
Sbjct: 62  AFVQAVACAEAGVTLISPFVGRIYDWYVAKTGQKEYEPHEDPGVKSVTAIYNYYKKFGYK 121

Query: 740 TQVMGASFRIRGN-T*XTGCD 799
           T VMGASFR  G  T  TGCD
Sbjct: 122 TVVMGASFRNVGQITGLTGCD 142


>SB_56029| Best HMM Match : SEA (HMM E-Value=4.7)
          Length = 111

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +2

Query: 326 GCEILKIIPGRVSVEVDARLSFDKDASIA 412
           GCE+L+  PG  SV VDA + FDK A+++
Sbjct: 50  GCEVLRFRPG--SVVVDAIVYFDKVANVS 76


>SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)
          Length = 521

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 504 KQPKSWRRSMESIVILHCCSLCTKLLPVL 590
           K  + WR S E I+I  CC + TK+L V+
Sbjct: 199 KPIEEWRLSWEVIIIDECCKVQTKVLRVI 227


>SB_50794| Best HMM Match : Cys_knot (HMM E-Value=2.2)
          Length = 396

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 504 KQPKSWRRSMESIVILHCCSLCTKLLPVL 590
           K  + WR S E I+I  CC + TK+L V+
Sbjct: 60  KPIEEWRLSWEVIIIDECCKVQTKVLRVI 88


>SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 495 SQVEANLIKILSFLIPCSANKLINLIAFAMLASLSNDN 382
           + V ANLI  + F +  S  +LINL  + ++A  S +N
Sbjct: 228 NNVAANLISSMRFYVMDSIGRLINLNGYRIVADNSGEN 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,191,376
Number of Sequences: 59808
Number of extensions: 554575
Number of successful extensions: 1236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)