Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B24
(1067 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47911| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 3e-09
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 32 0.91
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 30 3.7
SB_41376| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 29 6.4
SB_25544| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.4
SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4) 29 8.4
>SB_47911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 60.1 bits (139), Expect = 3e-09
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = +3
Query: 171 ETPLPRAWSTKDKFS*IGLSQNNLRVHYXGXGXTHRDAAS 290
ETPLPR+WS KDKF+ IGLSQNNLRVHY G +++ A+
Sbjct: 26 ETPLPRSWSPKDKFTFIGLSQNNLRVHYKERGSKYKENAN 65
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 31.9 bits (69), Expect = 0.91
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +1
Query: 652 PXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPS 792
P P+PP PP P PP I + PPPT P+
Sbjct: 222 PSPSPPRPPPPPPPSPPRPLAAKLPEPPPIPNMPPTLPPPTLGYLPT 268
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 649 RPXPNPPSXVXPPXPXPP 702
RP P+PP PP P PP
Sbjct: 210 RPPPSPPPPPPPPSPSPP 227
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 31.1 bits (67), Expect = 1.6
Identities = 19/65 (29%), Positives = 21/65 (32%)
Frame = +1
Query: 652 PXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPXLPSXXG 831
P P PP+ PP P PP PPP A P P P+
Sbjct: 165 PNPPPPNAPYPPPPYPPPPNPPYPPPP-----NPPYPPPPNAPNPPPPNPPYPPPPNAPN 219
Query: 832 PPXXP 846
PP P
Sbjct: 220 PPYPP 224
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 30.3 bits (65), Expect = 2.8
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +1
Query: 652 PXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPP 771
P P PP PP P PP + H PPP
Sbjct: 104 PPPPPPPPPPPPPPPPPITLHHEQHVVSHVMHPAPPPPPP 143
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 30.3 bits (65), Expect = 2.8
Identities = 24/75 (32%), Positives = 26/75 (34%)
Frame = +1
Query: 640 TXXRPXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPXLP 819
T P P PP+ PP P P T+G PPPT P P P
Sbjct: 351 TNNPPSPPPPTNNTPPPPPPTNKPPPPPPP----TNGPPPPPPPT--NGPP-----PPPP 399
Query: 820 SXXGPPXXPNHRNWP 864
GPP P N P
Sbjct: 400 PTNGPPPPPPPTNGP 414
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.9 bits (64), Expect = 3.7
Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Frame = +1
Query: 652 PXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPXLPS-XX 828
P P PP PP P PP +G P P F P P+
Sbjct: 29 PPPPPPYEAPPPPPGPPGPDGPPGFPGPQGPNGPKGPPGLPGPPGPPGFQGPPGNPAGAI 88
Query: 829 GPPXXP 846
GPP P
Sbjct: 89 GPPGLP 94
>SB_41376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 29.5 bits (63), Expect = 4.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 104 QNQVQSDTVDRLKLLYPNVNERRDSFTPCVEH 199
++Q D +DR +Y N R+D F P +H
Sbjct: 131 EHQAPRDLIDRESFIYLGTNNRQDHFKPTRQH 162
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 29.1 bits (62), Expect = 6.4
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = +1
Query: 652 PXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPXLPSXXG 831
P P PP PP P PP PPP P P P
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424
Query: 832 PPXXP 846
PP P
Sbjct: 425 PPPPP 429
Score = 29.1 bits (62), Expect = 6.4
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = +1
Query: 652 PXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPXLPSXXG 831
P P PPS PP P PP PPP P P P
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPP 430
Query: 832 PP 837
PP
Sbjct: 431 PP 432
>SB_25544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 28.7 bits (61), Expect = 8.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 348 SNLEVVEPTRRRVSDVLPLHWPRLGEXYHXLY 253
SNL+ V P +R+ LPL L E Y +Y
Sbjct: 72 SNLQRVRPVNQRLPKTLPLRLQHLEEAYRLVY 103
>SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4)
Length = 647
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 649 RPXPNPPSXVXPPXPXPP 702
RP P PP PP P PP
Sbjct: 208 RPAPRPPLDTPPPLPPPP 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,416,818
Number of Sequences: 59808
Number of extensions: 368437
Number of successful extensions: 1528
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3225210896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -