BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A22
         (311 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13908| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.58 
SB_3199| Best HMM Match : 7tm_1 (HMM E-Value=0)                        29   1.0  
SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)          26   5.4  
SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)             26   7.2  
SB_49297| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)                  25   9.5  
SB_47456| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_13908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +3

Query: 69  HCDAKRFTRCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKIGKVTKNGSRDYGLFQI 248
           + D  R+    ++ E  R GF   L   W  + E E  R  D+   + ++ +   GLF I
Sbjct: 270 NADDFRYQASDVIHE--RGGFTWDLFFTWKAIPEAEKKRRKDETDYI-RSPTMAGGLFAI 326

Query: 249 NDKYWCSTGSTPGK 290
           + KY+   GS   K
Sbjct: 327 HKKYFYDLGSYDSK 340


>SB_3199| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 399

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 266 APVFVIDLEEAVVSRSVLSHFTNFVGKPSAFVLDKADPVTHQTFIE 129
           A +F+  +   +V+   +  F NF     AF++ K +PV H T +E
Sbjct: 77  ADLFITCVSMPIVTMVNIQGFQNFTSFTLAFIVCKLNPVIHGTSME 122


>SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)
          Length = 1592

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 307 QVTWQSFPGVDPVLHQYLSLIWK 239
           ++ WQ+F  V+ VL QY S  W+
Sbjct: 46  ELRWQNFGSVEGVLRQYPSSEWQ 68


>SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)
          Length = 628

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 85  RFASQCKASAKRASNITYFDIMFPSE 8
           RF S+CK+   RA +I   D+  PSE
Sbjct: 194 RFCSECKSKVLRAFSILAGDLDGPSE 219


>SB_49297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 96  CGLVQELRRQGFDESLMSNWVCLVENESGR 185
           CG   EL++   DE + + W+C  E   G+
Sbjct: 41  CGSCDELKQFKMDEIVKNCWLCCHEEGDGQ 70


>SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 286 PGVDPVLHQYLSLIWKR 236
           P +DPV+ QY+ +I KR
Sbjct: 804 PDIDPVMLQYMQMIQKR 820


>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
          Length = 166

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 25  CRSTLYCSPFWHSLCIA 75
           CR  +Y  PFW +L IA
Sbjct: 133 CRLFMYVKPFWPTLAIA 149


>SB_47456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 216 NGSRDYGLFQINDKYWCSTGSTPGKDCHVT 305
           N   D+ L  +   ++C +GS P K  H T
Sbjct: 59  NSGVDHKLGMVKGNFYCDSGSIPKKFKHAT 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,808,114
Number of Sequences: 59808
Number of extensions: 177617
Number of successful extensions: 438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)