BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C11_e83_05.seq
         (1501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30574| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.2  
SB_40073| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.5  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  

>SB_30574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -1

Query: 130 TERALTISKQEQRRWPRPLVPNXLQPGGXH*XLERPPPR 14
           TER  ++  Q   R   PL  N   PG     LERPPPR
Sbjct: 2   TERRQSVRAQSNVREAAPLASNSCSPGDPL-VLERPPPR 39


>SB_40073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 112 ISKQEQRRWPRPLVPNXLQPGGXH*XLERPPPR 14
           ++K+ +  WP+ +  N   PG     LERPPPR
Sbjct: 34  LAKRARYCWPKDIASNSCSPGDPL-VLERPPPR 65


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 683  LIIYALKNWIITLKR*VRIVMLTKCVPAAP 772
            LI+YAL N     K+  R++  TKC+P  P
Sbjct: 2116 LILYALTNNEHGSKKVKRLIRFTKCIPTTP 2145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,687,756
Number of Sequences: 59808
Number of extensions: 544243
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4859439678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)