BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_B05_e34_03.seq
         (1440 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   0.002
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   0.002
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.002
SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.11 
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   36   0.11 
SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)                     29   6.9  

>SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 41.5 bits (93), Expect = 0.002
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +1

Query: 163 NGFYLGKLRGLLGDGNNEPYDDFRLPNGKICXSESEFGNAYSL 291
           N F   +LRGL GD N E YD+F+ P G+   +  +F  A+ L
Sbjct: 18  NPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 60


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 41.5 bits (93), Expect = 0.002
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +1

Query: 163  NGFYLGKLRGLLGDGNNEPYDDFRLPNGKICXSESEFGNAYSL 291
            N F   +LRGL GD N E YD+F+ P G+   +  +F  A+ L
Sbjct: 1428 NPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 1470


>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 41.1 bits (92), Expect = 0.002
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +1

Query: 172 YLGKLRGLLGDGNNEPYDDFRLPNGKICXSESEFGNAYSL 291
           Y G   GL G+ N  P DDF + NG+   S+ EFG ++SL
Sbjct: 176 YRGNTCGLCGNFNGVPSDDFMMKNGRYARSDREFGKSWSL 215


>SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 35.5 bits (78), Expect = 0.11
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 190 GLLGDGNNEPYDDFRLPNGKICXSESEFGNAYSL 291
           GLLG  NNE +D+   PNGK   S  EF N++ +
Sbjct: 63  GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEV 96


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 35.5 bits (78), Expect = 0.11
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 190  GLLGDGNNEPYDDFRLPNGKICXSESEFGNAYSL 291
            GLLG  NNE +D+   PNGK   S  EF N++ +
Sbjct: 1811 GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEV 1844


>SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)
          Length = 237

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 139 LEVCYFEVNGFYLGKLRGLLGDGNNEPYDDFRLPNGKICXSESEFGNA 282
           L V +     FY G   GL GD +N P +DF  P G+      +F  +
Sbjct: 187 LNVLFTPTAAFY-GNTGGLCGDMDNNPANDFTGPTGERFTDAVQFAES 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,022,348
Number of Sequences: 59808
Number of extensions: 280134
Number of successful extensions: 522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4624684138
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)