Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40081
         (717 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    50   7e-08
DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.           23   9.5  
AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein...    23   9.5  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 50.0 bits (114), Expect = 7e-08
 Identities = 23/63 (36%), Positives = 42/63 (66%)
 Frame = +2

Query: 8   YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 187
           Y++++  TRELA QI  E  +F+ + + ++V V +GG  +Q   ++++  C H++V TPG
Sbjct: 251 YIVIVAPTRELAIQIHDEGRKFA-HGTKLKVCVSYGGTAVQHQLQLMRGGC-HVLVATPG 308

Query: 188 RIL 196
           R+L
Sbjct: 309 RLL 311



 Score = 25.0 bits (52), Expect = 2.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 328 KQVMMFSATLSKEIRPVCKXFMQDPMEVYV 417
           +Q +MFSAT   EI+ +   F+ + + V+V
Sbjct: 359 RQTLMFSATFPAEIQELAGKFLHNYICVFV 388


>DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 83  YISKNARTPYLFGKPTLWCGT 21
           + + +A   YLFG   +WC T
Sbjct: 53  FYTHSALLNYLFGMEGVWCST 73


>AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 304 IFRNTPHGKQVMMFSATLSKEIRPVCKXFMQDPMEVYVD-DEAKLKLHGL 450
           ++RN  + K  +M    L+ ++  +   F+Q  + +Y+  D  +  +H L
Sbjct: 83  LWRNVRNTKHALMLKCLLTNDLIGLSGMFVQMCLHLYLSPDVVQANIHNL 132


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,252
Number of Sequences: 2352
Number of extensions: 13373
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 72765525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)