Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30118
         (788 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    28   0.29 
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    27   0.50 
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    26   1.2  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    25   2.7  
AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakini...    23   8.1  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   8.1  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 0.29
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 173 LHQRSEERDFLFNAVETLPCVKKKADWVYSGLQARLQHL 289
           +++ S E D  +   +   CV K   W Y G Q  L+H+
Sbjct: 143 IYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVDLRHI 181


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 0.50
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 173 LHQRSEERDFLFNAVETLPCVKKKADWVYSGLQARLQHL 289
           +++ S E +  +   +   C+ K   W Y+G Q  L+HL
Sbjct: 149 IYKSSCEMNVEYFPYDEQTCLMKFGSWTYNGAQVELRHL 187


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 173 LHQRSEERDFLFNAVETLPCVKKKADWVYSGLQARLQHL 289
           +++ S E D  +   +   CV K   W Y G +  L+H+
Sbjct: 147 IYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVDLRHM 185


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 230 CVKKKADWVYSGLQARLQHL 289
           CV K   W Y G +  L+H+
Sbjct: 166 CVLKLGSWTYDGFKVDLRHM 185


>AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakinin
           GPCR protein.
          Length = 634

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 785 GEPHCQGDGQSPP 747
           GE HC GD   PP
Sbjct: 348 GEQHCTGDTGKPP 360


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 265 STVDPICFLLYTGKSLNRI 209
           S+  PIC L  TGK+L R+
Sbjct: 497 SSFRPICLLDNTGKALERL 515


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 861,119
Number of Sequences: 2352
Number of extensions: 17858
Number of successful extensions: 34
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82744797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)