Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0082.Seq
         (627 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    26   0.85 
DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domai...    24   4.5  
AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium transport...    24   4.5  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 26.2 bits (55), Expect = 0.85
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = +3

Query: 288 NLQHPQLAAQEIPLLRSQDQWFRFAGSTRGYIKNSRSSIILLHACAHNPTGVDPKPSDWE 467
           N QH  L A  + +  + +     +G+T G I    ++  +     HN   V P PS + 
Sbjct: 325 NAQHLLLRANRLTVSDNHNLSNSGSGNTAGTIITPATTNSVDVLAVHNAKSVSPLPS-YT 383

Query: 468 QLSKVIKERKLFPFSTWRIKVSP 536
           Q  +  ++    P S W+ K  P
Sbjct: 384 QQQQQQQQSAAAPPSYWKQKKLP 406


>DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domain
           protein protein.
          Length = 285

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -2

Query: 377 SSSAPCKSK-PLVLGSK*RYFLCGKLRVLQICGWFPQV 267
           SS  P K   P+  G+K     CG+   LQ CG   Q+
Sbjct: 188 SSVRPSKGLIPVAPGAKCPITTCGRNEALQACGTCNQI 225


>AF510719-1|AAP47148.1|  591|Anopheles gambiae ammonium
           transport-like protein protein.
          Length = 591

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 501 IISFL*SPWKVVPSRWAWGQH 439
           I SF  +    +P+ W WG+H
Sbjct: 163 IFSFFNTIVYCIPAGWVWGEH 183


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 727,790
Number of Sequences: 2352
Number of extensions: 16661
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61050630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)