Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F05f
         (384 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   3.8  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   3.8  
U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    22   8.9  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +3

Query: 36   ASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNK 164
            A L+        +I  +H+ +DV+++++ S +  S L  + N+
Sbjct: 1974 APLHRHRVENIQKISGDHILSDVLLSNHQSQIITSALYSSGNE 2016


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +3

Query: 36   ASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNK 164
            A L+        +I  +H+ +DV+++++ S +  S L  + N+
Sbjct: 1975 APLHRHRVENIQKISGDHILSDVLLSNHQSQIITSALYSSGNE 2017


>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 223 WSTPTSSGCKAPRTSS 270
           WS P+S  C   RT+S
Sbjct: 70  WSRPSSMRCAPARTAS 85


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,365
Number of Sequences: 2352
Number of extensions: 6947
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 29501847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)