Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b11r
         (747 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ182015-1|ABA56307.1|  353|Anopheles gambiae G(alpha)q2 protein.      29   0.15 
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    24   4.3  

>DQ182015-1|ABA56307.1|  353|Anopheles gambiae G(alpha)q2 protein.
          Length = 353

 Score = 29.1 bits (62), Expect = 0.15
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
 Frame = -2

Query: 404 VRFVDYGNIEVISPADVREIKDEWAELP-----------PVTISAKLYNVQLSPDAEMNS 258
           +R VD+  +    P  V+ IKD WA+              +T SAK Y +++   A  N 
Sbjct: 107 IRSVDFETVTTFEPPYVQAIKDLWADAGIQECYDRRREYQLTDSAKYYLMEIDRVAAPN- 165

Query: 257 IVKVYTDVLLDKGPFHTKIIEYENDIPCVELR 162
            +    D+L  + P  T IIEY  D+  +  R
Sbjct: 166 YLPTEQDILRVRVP-TTGIIEYPFDLEEIRFR 196


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 439 IEARYHKLSSGNIAIHALFSYI 504
           ++A+  KL+  NI +HALFS +
Sbjct: 414 LQAQLDKLTQINIHLHALFSAV 435


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 715,719
Number of Sequences: 2352
Number of extensions: 15361
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76923555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)