Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0117
         (690 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.         164   3e-42
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.         164   3e-42
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.         164   3e-42
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.          149   8e-38
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    23   9.1  

>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  164 bits (398), Expect = 3e-42
 Identities = 86/117 (73%), Positives = 93/117 (79%), Gaps = 4/117 (3%)
 Frame = -3

Query: 628 KPSFLGMEACG-HPRDHI*LHH---EVRRGHP*GLVRQHRIVRWTTMYPGIADRMQKEIT 461
           +PSFLGMEACG H   +  +     ++R+     L     +   TTMYPGIADRMQKEIT
Sbjct: 264 QPSFLGMEACGIHETTYNSIMKCDVDIRKD----LYANTVLSGGTTMYPGIADRMQKEIT 319

Query: 460 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 290
           ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376



 Score = 72.9 bits (171), Expect = 9e-15
 Identities = 35/54 (64%), Positives = 38/54 (70%)
 Frame = -1

Query: 669 IGKRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           IG  +   P+     P F   +  GIHETTYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 251 IGNERFRCPEALF-QPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 303


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  164 bits (398), Expect = 3e-42
 Identities = 86/117 (73%), Positives = 93/117 (79%), Gaps = 4/117 (3%)
 Frame = -3

Query: 628 KPSFLGMEACG-HPRDHI*LHH---EVRRGHP*GLVRQHRIVRWTTMYPGIADRMQKEIT 461
           +PSFLGMEACG H   +  +     ++R+     L     +   TTMYPGIADRMQKEIT
Sbjct: 264 QPSFLGMEACGIHETTYNSIMKCDVDIRKD----LYANTVLSGGTTMYPGIADRMQKEIT 319

Query: 460 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 290
           ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376



 Score = 72.9 bits (171), Expect = 9e-15
 Identities = 35/54 (64%), Positives = 38/54 (70%)
 Frame = -1

Query: 669 IGKRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           IG  +   P+     P F   +  GIHETTYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 251 IGNERFRCPEALF-QPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 303


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  164 bits (398), Expect = 3e-42
 Identities = 86/117 (73%), Positives = 93/117 (79%), Gaps = 4/117 (3%)
 Frame = -3

Query: 628 KPSFLGMEACG-HPRDHI*LHH---EVRRGHP*GLVRQHRIVRWTTMYPGIADRMQKEIT 461
           +PSFLGMEACG H   +  +     ++R+     L     +   TTMYPGIADRMQKEIT
Sbjct: 264 QPSFLGMEACGIHETTYNSIMKCDVDIRKD----LYANTVLSGGTTMYPGIADRMQKEIT 319

Query: 460 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 290
           ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376



 Score = 72.9 bits (171), Expect = 9e-15
 Identities = 35/54 (64%), Positives = 38/54 (70%)
 Frame = -1

Query: 669 IGKRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           IG  +   P+     P F   +  GIHETTYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 251 IGNERFRCPEALF-QPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 303


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score =  149 bits (361), Expect = 8e-38
 Identities = 78/116 (67%), Positives = 87/116 (75%), Gaps = 3/116 (2%)
 Frame = -3

Query: 628 KPSFLGMEACGHPRDHI*LHHEVRRGHP*---GLVRQHRIVRWTTMYPGIADRMQKEITA 458
           +PSFLGME+ G    H  +++ + R        L     +   TTMYPGIADRMQKEIT+
Sbjct: 264 QPSFLGMESTGI---HETVYNSIMRCDVDIRKDLYANSVLSGGTTMYPGIADRMQKEITS 320

Query: 457 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 290
           LAPST+KIKIIAPPERKYSVWIGGSILASLSTFQ MWISK EYDE GP IVHRKCF
Sbjct: 321 LAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQTMWISKHEYDEGGPGIVHRKCF 376



 Score = 67.7 bits (158), Expect = 3e-13
 Identities = 32/54 (59%), Positives = 37/54 (68%)
 Frame = -1

Query: 669 IGKRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           IG  +   P+     P F   +  GIHET YNSIM+CDVDIRKDLYAN+VLSGG
Sbjct: 251 IGNERFRAPEALF-QPSFLGMESTGIHETVYNSIMRCDVDIRKDLYANSVLSGG 303


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 548 SVRTCTPTPYCPVDHHVPWNRRPY 477
           +VR C PTP   + ++  W  RP+
Sbjct: 230 TVRLCLPTPPNRLTNNGYWQLRPH 253


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,706
Number of Sequences: 2352
Number of extensions: 18417
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69831885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)