Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0076
         (472 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF283275-1|AAG15376.1|  133|Anopheles gambiae small heat shock p...    26   0.58 
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    26   0.58 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    23   4.1  
CR954256-9|CAJ14150.1|  872|Anopheles gambiae putative calcium/c...    23   5.4  
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           23   5.4  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    23   7.1  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   7.1  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   7.1  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    22   9.4  

>AF283275-1|AAG15376.1|  133|Anopheles gambiae small heat shock
           protein protein.
          Length = 133

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 149 NCRLRQTKHRDRRSDHTPLIRRETLSHALRRFVLKNESDEPERANS 286
           NC L + KH +++ DH  + R     H +RR++L    +E +  +S
Sbjct: 36  NCVLVEGKHEEKQDDHGYVSR-----HFVRRYMLPKGHNEADIVSS 76


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 449 SGPFQRHIAAGA--EIAYFPGRFNKVLYDNVVAV 354
           +GP +RHI+AG   E    P  +N V+YD V+ V
Sbjct: 629 AGPVERHISAGVPQESILGPTLWN-VMYDGVLGV 661


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 330 ASVGKPVNNRDHVIIENFIK 389
           AS+G+P++NR  V+    IK
Sbjct: 74  ASIGRPISNRASVMARFIIK 93


>CR954256-9|CAJ14150.1|  872|Anopheles gambiae putative
           calcium/calmodulin-dependentprotein kinase, CAKI
           protein.
          Length = 872

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 156 GSGK--QNIETAEATILHLLDEKHLAMLSDDLYLKMKATSP 272
           GSGK  Q+        L   + KH++  + DL LKM A +P
Sbjct: 202 GSGKRLQDAIARGRVTLDTPEWKHISSNAKDLVLKMLAPNP 242


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 342 KPVNNRDHVIIENFIKPSGKVGN-FC 416
           K  +NR +V I+ ++ PSG  GN FC
Sbjct: 543 KVPSNRPNVTIDGYVDPSG--GNRFC 566


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 162 GKQNIETAEATILHLLDEKHLAMLSDDLYLKMKATSPNGQI 284
           GK+ I+T EA +   LD     +  DD    +  T  N  I
Sbjct: 236 GKRTIKTYEALVKSSLDPNSDRLTEDDEDENISVTRTNSTI 276


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
           protein.
          Length = 3325

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +2

Query: 41  DKHIPFLMSETTIESIKEMNAKFLSGHNITATASGLNCRLRQTKHRDRRSDHT 199
           D  +P     T   S+    AKF    + T T+SG+  R       D R++ T
Sbjct: 283 DGGVPDPSYYTADASLLHHGAKFNKPAHQTPTSSGIGSRTHPLYQPDHRAEPT 335


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 446 GPFQRHIAAGAEIAYFPG-RFNKVLYDNVVAV 354
           GP +RHI+AG       G     ++YD V  V
Sbjct: 691 GPVERHISAGVPQGSILGPTLWNMMYDGVFGV 722


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 328 KYLDQLKSFGPXSSGICPFGLVAFIFKYKSSESMAKCF 215
           +Y  Q   F P +  +  FGL         SE+ A+CF
Sbjct: 326 QYYYQSTQFAPVNFVLPHFGLGQMYIYRGDSENAAQCF 363


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,819
Number of Sequences: 2352
Number of extensions: 9807
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 41245467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)