Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0056
         (653 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    27   0.68 
EF519384-1|ABP68493.1|  506|Anopheles gambiae LRIM1 protein.           25   1.6  
EF519383-1|ABP68492.1|  506|Anopheles gambiae LRIM1 protein.           25   1.6  
EF519381-1|ABP68490.1|  506|Anopheles gambiae LRIM1 protein.           25   1.6  
EF519380-1|ABP68489.1|  506|Anopheles gambiae LRIM1 protein.           25   1.6  
EF519374-1|ABP68483.1|  506|Anopheles gambiae LRIM1 protein.           25   1.6  
EF519371-1|ABP68480.1|  506|Anopheles gambiae LRIM1 protein.           25   1.6  
EF519369-1|ABP68478.1|  506|Anopheles gambiae LRIM1 protein.           25   1.6  
EF519366-1|ABP68475.1|  506|Anopheles gambiae LRIM1 protein.           25   1.6  
EF519359-1|ABP68468.1|  506|Anopheles gambiae LRIM1 protein.           25   1.6  
EF519372-1|ABP68481.1|  506|Anopheles gambiae LRIM1 protein.           25   2.1  
EF519368-1|ABP68477.1|  506|Anopheles gambiae LRIM1 protein.           25   2.1  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   8.4  

>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 26.6 bits (56), Expect = 0.68
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 6   KLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWR 164
           KL+   E+ + ++ + K    RN+  N   VE R+  S+ Y  V+     SWR
Sbjct: 702 KLSLAPEKTELLMISSKRSGYRNIPVNICGVEVRSKRSIRYLGVMLHDHLSWR 754



 Score = 24.6 bits (51), Expect = 2.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 62  SITQRVRQ*ADSGGEEPAVGRLQERDRR 145
           S  Q ++Q  D+G    ++GR   RDRR
Sbjct: 544 STLQAIQQVVDAGRRALSLGRTNNRDRR 571


>EF519384-1|ABP68493.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   KLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 119
           +LAE+  R  ++  EA   VAS N +  EL V E+NL S
Sbjct: 468 QLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506


>EF519383-1|ABP68492.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   KLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 119
           +LAE+  R  ++  EA   VAS N +  EL V E+NL S
Sbjct: 468 QLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506


>EF519381-1|ABP68490.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   KLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 119
           +LAE+  R  ++  EA   VAS N +  EL V E+NL S
Sbjct: 468 QLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506


>EF519380-1|ABP68489.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   KLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 119
           +LAE+  R  ++  EA   VAS N +  EL V E+NL S
Sbjct: 468 QLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506


>EF519374-1|ABP68483.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   KLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 119
           +LAE+  R  ++  EA   VAS N +  EL V E+NL S
Sbjct: 468 QLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506


>EF519371-1|ABP68480.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   KLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 119
           +LAE+  R  ++  EA   VAS N +  EL V E+NL S
Sbjct: 468 QLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506


>EF519369-1|ABP68478.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   KLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 119
           +LAE+  R  ++  EA   VAS N +  EL V E+NL S
Sbjct: 468 QLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506


>EF519366-1|ABP68475.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   KLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 119
           +LAE+  R  ++  EA   VAS N +  EL V E+NL S
Sbjct: 468 QLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506


>EF519359-1|ABP68468.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   KLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 119
           +LAE+  R  ++  EA   VAS N +  EL V E+NL S
Sbjct: 468 QLAEENARLKKLNGEADLAVASANATLQELVVREQNLAS 506


>EF519372-1|ABP68481.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   KLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 119
           +LAE+  R  ++  EA   VAS N +  EL V E+NL S
Sbjct: 468 QLAEENARLKKLNGEADLAVASANATLQELLVREQNLAS 506


>EF519368-1|ABP68477.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   KLAEQAERYDEMV-EAMKNVASRNVSDNELTVEERNLLS 119
           +LAE+  R  ++  EA   VAS N +  EL V E+NL S
Sbjct: 468 QLAEENARLKKLNGEADLAVASANATLQELLVREQNLAS 506


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 180 EQKEETKGAEDKLNMIRAYRSQVEKELRDICSDIL 284
           E+KEE K  E+KL       +   +  RD+ + +L
Sbjct: 154 EEKEEAKRREEKLEAQMEKLAAAHQRDRDVLNSLL 188


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,792
Number of Sequences: 2352
Number of extensions: 9127
Number of successful extensions: 47
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)