Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30096
(806 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine r... 34 0.69
X68275-1|CAA48336.1| 451|Homo sapiens nicotinic receptor beta 4... 34 0.69
U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine r... 34 0.69
U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic acetylch... 34 0.69
BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor, n... 34 0.69
BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor, n... 34 0.69
AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic acet... 34 0.69
AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic acet... 34 0.69
M83751-1|AAB08753.1| 234|Homo sapiens arginine-rich protein pro... 31 6.5
BT007110-1|AAP35774.1| 182|Homo sapiens arginine-rich, mutated ... 31 6.5
BC113590-1|AAI13591.1| 185|Homo sapiens arginine-rich, mutated ... 31 6.5
BC113588-1|AAI13589.1| 185|Homo sapiens arginine-rich, mutated ... 31 6.5
BC007282-1|AAH07282.1| 182|Homo sapiens ARMET protein protein. 31 6.5
>Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 33.9 bits (74), Expect = 0.69
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -3
Query: 501 DWHLLHQYHHAAEPLVTVRVAASLVFGSIRRSPPLEVDLPASSKRCFRRSLLVFFVYRMR 322
D L+ +Y LVT + S+ ++ P + KRCF L F ++ R
Sbjct: 291 DVPLIGKYLMFTMVLVTFSIVTSVCVLNVHHRSPSTHTMAPWVKRCFLHKLPTF-LFMKR 349
Query: 321 PNRDS*PVRIFQSRREC 271
P DS P R F + C
Sbjct: 350 PGPDSSPARAFPPSKSC 366
>X68275-1|CAA48336.1| 451|Homo sapiens nicotinic receptor beta 4
subunit protein.
Length = 451
Score = 33.9 bits (74), Expect = 0.69
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -3
Query: 501 DWHLLHQYHHAAEPLVTVRVAASLVFGSIRRSPPLEVDLPASSKRCFRRSLLVFFVYRMR 322
D L+ +Y LVT + S+ ++ P + KRCF L F ++ R
Sbjct: 244 DVPLIGKYLMFTMVLVTFSIVTSVCVLNVHHRSPSTHTMAPWVKRCFLHKLPTF-LFMKR 302
Query: 321 PNRDS*PVRIFQSRREC 271
P DS P R F + C
Sbjct: 303 PGPDSSPARAFPPSKSC 319
>U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 33.9 bits (74), Expect = 0.69
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -3
Query: 501 DWHLLHQYHHAAEPLVTVRVAASLVFGSIRRSPPLEVDLPASSKRCFRRSLLVFFVYRMR 322
D L+ +Y LVT + S+ ++ P + KRCF L F ++ R
Sbjct: 291 DVPLIGKYLMFTMVLVTFSIVTSVCVLNVHHRSPSTHTMAPWVKRCFLHKLPTF-LFMKR 349
Query: 321 PNRDS*PVRIFQSRREC 271
P DS P R F + C
Sbjct: 350 PGPDSSPARAFPPSKSC 366
>U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic
acetylcholine receptor subunit protein.
Length = 498
Score = 33.9 bits (74), Expect = 0.69
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -3
Query: 501 DWHLLHQYHHAAEPLVTVRVAASLVFGSIRRSPPLEVDLPASSKRCFRRSLLVFFVYRMR 322
D L+ +Y LVT + S+ ++ P + KRCF L F ++ R
Sbjct: 291 DVPLIGKYLMFTMVLVTFSIVTSVCVLNVHHRSPSTHTMAPWVKRCFLHKLPTF-LFMKR 349
Query: 321 PNRDS*PVRIFQSRREC 271
P DS P R F + C
Sbjct: 350 PGPDSSPARAFPPSKSC 366
>BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 33.9 bits (74), Expect = 0.69
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -3
Query: 501 DWHLLHQYHHAAEPLVTVRVAASLVFGSIRRSPPLEVDLPASSKRCFRRSLLVFFVYRMR 322
D L+ +Y LVT + S+ ++ P + KRCF L F ++ R
Sbjct: 291 DVPLIGKYLMFTMVLVTFSIVTSVCVLNVHHRSPSTHTMAPWVKRCFLHKLPTF-LFMKR 349
Query: 321 PNRDS*PVRIFQSRREC 271
P DS P R F + C
Sbjct: 350 PGPDSSPARAFPPSKSC 366
>BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 33.9 bits (74), Expect = 0.69
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -3
Query: 501 DWHLLHQYHHAAEPLVTVRVAASLVFGSIRRSPPLEVDLPASSKRCFRRSLLVFFVYRMR 322
D L+ +Y LVT + S+ ++ P + KRCF L F ++ R
Sbjct: 291 DVPLIGKYLMFTMVLVTFSIVTSVCVLNVHHRSPSTHTMAPWVKRCFLHKLPTF-LFMKR 349
Query: 321 PNRDS*PVRIFQSRREC 271
P DS P R F + C
Sbjct: 350 PGPDSSPARAFPPSKSC 366
>AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic
acetylcholine receptor beta-4 subunit protein.
Length = 497
Score = 33.9 bits (74), Expect = 0.69
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -3
Query: 501 DWHLLHQYHHAAEPLVTVRVAASLVFGSIRRSPPLEVDLPASSKRCFRRSLLVFFVYRMR 322
D L+ +Y LVT + S+ ++ P + KRCF L F ++ R
Sbjct: 290 DVPLIGKYLMFTMVLVTFSIVTSVCVLNVHHRSPSTHTMAPWVKRCFLHKLPTF-LFMKR 348
Query: 321 PNRDS*PVRIFQSRREC 271
P DS P R F + C
Sbjct: 349 PGPDSSPARAFPPSKSC 365
>AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic
acetylcholine receptor beta 4 subunit protein.
Length = 498
Score = 33.9 bits (74), Expect = 0.69
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -3
Query: 501 DWHLLHQYHHAAEPLVTVRVAASLVFGSIRRSPPLEVDLPASSKRCFRRSLLVFFVYRMR 322
D L+ +Y LVT + S+ ++ P + KRCF L F ++ R
Sbjct: 291 DVPLIGKYLMFTMVLVTFSIVTSVCVLNVHHRSPSTHTMAPWVKRCFLHKLPTF-LFMKR 349
Query: 321 PNRDS*PVRIFQSRREC 271
P DS P R F + C
Sbjct: 350 PGPDSSPARAFPPSKSC 366
>M83751-1|AAB08753.1| 234|Homo sapiens arginine-rich protein
protein.
Length = 234
Score = 30.7 bits (66), Expect = 6.5
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -1
Query: 194 LRSHSP--KIAGSLAQPSSSVTRYSFSTLVDTSLVFATQLRAKP-P*ILDGWTSTCK 33
L H P KI L + S + + +D S V +LR K ILD W TCK
Sbjct: 148 LAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWGETCK 204
>BT007110-1|AAP35774.1| 182|Homo sapiens arginine-rich, mutated in
early stage tumors protein.
Length = 182
Score = 30.7 bits (66), Expect = 6.5
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -1
Query: 194 LRSHSP--KIAGSLAQPSSSVTRYSFSTLVDTSLVFATQLRAKP-P*ILDGWTSTCK 33
L H P KI L + S + + +D S V +LR K ILD W TCK
Sbjct: 96 LAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWGETCK 152
>BC113590-1|AAI13591.1| 185|Homo sapiens arginine-rich, mutated in
early stage tumors protein.
Length = 185
Score = 30.7 bits (66), Expect = 6.5
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -1
Query: 194 LRSHSP--KIAGSLAQPSSSVTRYSFSTLVDTSLVFATQLRAKP-P*ILDGWTSTCK 33
L H P KI L + S + + +D S V +LR K ILD W TCK
Sbjct: 99 LAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWGETCK 155
>BC113588-1|AAI13589.1| 185|Homo sapiens arginine-rich, mutated in
early stage tumors protein.
Length = 185
Score = 30.7 bits (66), Expect = 6.5
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -1
Query: 194 LRSHSP--KIAGSLAQPSSSVTRYSFSTLVDTSLVFATQLRAKP-P*ILDGWTSTCK 33
L H P KI L + S + + +D S V +LR K ILD W TCK
Sbjct: 99 LAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWGETCK 155
>BC007282-1|AAH07282.1| 182|Homo sapiens ARMET protein protein.
Length = 182
Score = 30.7 bits (66), Expect = 6.5
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -1
Query: 194 LRSHSP--KIAGSLAQPSSSVTRYSFSTLVDTSLVFATQLRAKP-P*ILDGWTSTCK 33
L H P KI L + S + + +D S V +LR K ILD W TCK
Sbjct: 96 LAHHIPVEKICEKLKKKDSQICELKYDKQIDLSTVDLKKLRVKELKKILDDWGETCK 152
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,322,947
Number of Sequences: 237096
Number of extensions: 2139269
Number of successful extensions: 6041
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6030
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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