Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30060
(593 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 186 7e-47
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 186 7e-47
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 186 7e-47
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 186 7e-47
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 184 3e-46
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 161 2e-39
U05012-1|AAA75374.1| 825|Homo sapiens TrkC protein. 30 7.1
S76476-1|AAB33112.1| 612|Homo sapiens trkC protein. 30 7.1
S76475-1|AAB33111.1| 839|Homo sapiens trkC protein. 30 7.1
BT007291-1|AAP35955.1| 612|Homo sapiens neurotrophic tyrosine k... 30 7.1
BC013693-1|AAH13693.1| 612|Homo sapiens neurotrophic tyrosine k... 30 7.1
AJ224521-1|CAA12029.1| 839|Homo sapiens TRKC protein. 30 7.1
BC117263-1|AAI17264.1| 1069|Homo sapiens SLC24A1 protein protein. 29 9.4
AF062922-1|AAC77912.1| 1099|Homo sapiens retinal rod Na-Ca+K exc... 29 9.4
AF062921-1|AAC16732.1| 1099|Homo sapiens retinal rod Na-Ca+K exc... 29 9.4
AF026132-1|AAB97832.1| 1081|Homo sapiens retinal rod Na+/Ca+, K+... 29 9.4
AB014602-1|BAA31677.2| 988|Homo sapiens KIAA0702 protein protein. 29 9.4
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 186 bits (452), Expect = 7e-47
Identities = 94/171 (54%), Positives = 112/171 (65%)
Frame = +1
Query: 1 IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62
Query: 181 VSRLARHMKKTNS*GFDCRGSGDSQNDVRLYKIPKMTVAALHVTEKARARILAAGGEILT 360
+SR+ R MK G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILT
Sbjct: 63 LSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILT 122
Query: 361 FDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGLK 513
FDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG K
Sbjct: 123 FDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 186 bits (452), Expect = 7e-47
Identities = 94/171 (54%), Positives = 112/171 (65%)
Frame = +1
Query: 1 IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62
Query: 181 VSRLARHMKKTNS*GFDCRGSGDSQNDVRLYKIPKMTVAALHVTEKARARILAAGGEILT 360
+SR+ R MK G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILT
Sbjct: 63 LSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILT 122
Query: 361 FDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGLK 513
FDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG K
Sbjct: 123 FDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 186 bits (452), Expect = 7e-47
Identities = 94/171 (54%), Positives = 112/171 (65%)
Frame = +1
Query: 1 IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62
Query: 181 VSRLARHMKKTNS*GFDCRGSGDSQNDVRLYKIPKMTVAALHVTEKARARILAAGGEILT 360
+SR+ R MK G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILT
Sbjct: 63 LSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILT 122
Query: 361 FDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGLK 513
FDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG K
Sbjct: 123 FDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 186 bits (452), Expect = 7e-47
Identities = 94/171 (54%), Positives = 112/171 (65%)
Frame = +1
Query: 1 IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62
Query: 181 VSRLARHMKKTNS*GFDCRGSGDSQNDVRLYKIPKMTVAALHVTEKARARILAAGGEILT 360
+SR+ R MK G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILT
Sbjct: 63 LSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILT 122
Query: 361 FDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGLK 513
FDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG K
Sbjct: 123 FDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 184 bits (447), Expect = 3e-46
Identities = 93/171 (54%), Positives = 111/171 (64%)
Frame = +1
Query: 1 IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLC 62
Query: 181 VSRLARHMKKTNS*GFDCRGSGDSQNDVRLYKIPKMTVAALHVTEKARARILAAGGEILT 360
+SR+ R MK G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILT
Sbjct: 63 LSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILT 122
Query: 361 FDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGLK 513
FDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG K
Sbjct: 123 FDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 161 bits (391), Expect = 2e-39
Identities = 79/135 (58%), Positives = 96/135 (71%)
Frame = +1
Query: 109 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKTNS*GFDCRGSGDSQNDVRLYKIPKM 288
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK G +DVR+ ++PK+
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKL 75
Query: 289 TVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGA 468
V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE RHFG APG
Sbjct: 76 KVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGT 135
Query: 469 PRSHTKPYVRTKGLK 513
P SHTKPYVR+KG K
Sbjct: 136 PHSHTKPYVRSKGRK 150
>U05012-1|AAA75374.1| 825|Homo sapiens TrkC protein.
Length = 825
Score = 29.9 bits (64), Expect = 7.1
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 112 NAKFNQIVLRRLFMSRINRPPISVSRLARHMKKTNS*GFDCRGSGDSQNDV 264
NA +Q+ L R+ +S+ + P ISVS + +++ ++ C GSG DV
Sbjct: 191 NADGSQLPLFRMNISQCDLPEISVSHVNLTVREGDNAVITCNGSGSPLPDV 241
>S76476-1|AAB33112.1| 612|Homo sapiens trkC protein.
Length = 612
Score = 29.9 bits (64), Expect = 7.1
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 112 NAKFNQIVLRRLFMSRINRPPISVSRLARHMKKTNS*GFDCRGSGDSQNDV 264
NA +Q+ L R+ +S+ + P ISVS + +++ ++ C GSG DV
Sbjct: 191 NADGSQLPLFRMNISQCDLPEISVSHVNLTVREGDNAVITCNGSGSPLPDV 241
>S76475-1|AAB33111.1| 839|Homo sapiens trkC protein.
Length = 839
Score = 29.9 bits (64), Expect = 7.1
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 112 NAKFNQIVLRRLFMSRINRPPISVSRLARHMKKTNS*GFDCRGSGDSQNDV 264
NA +Q+ L R+ +S+ + P ISVS + +++ ++ C GSG DV
Sbjct: 191 NADGSQLPLFRMNISQCDLPEISVSHVNLTVREGDNAVITCNGSGSPLPDV 241
>BT007291-1|AAP35955.1| 612|Homo sapiens neurotrophic tyrosine
kinase, receptor, type 3 protein.
Length = 612
Score = 29.9 bits (64), Expect = 7.1
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 112 NAKFNQIVLRRLFMSRINRPPISVSRLARHMKKTNS*GFDCRGSGDSQNDV 264
NA +Q+ L R+ +S+ + P ISVS + +++ ++ C GSG DV
Sbjct: 191 NADGSQLPLFRMNISQCDLPEISVSHVNLTVREGDNAVITCNGSGSPLPDV 241
>BC013693-1|AAH13693.1| 612|Homo sapiens neurotrophic tyrosine
kinase, receptor, type 3 protein.
Length = 612
Score = 29.9 bits (64), Expect = 7.1
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 112 NAKFNQIVLRRLFMSRINRPPISVSRLARHMKKTNS*GFDCRGSGDSQNDV 264
NA +Q+ L R+ +S+ + P ISVS + +++ ++ C GSG DV
Sbjct: 191 NADGSQLPLFRMNISQCDLPEISVSHVNLTVREGDNAVITCNGSGSPLPDV 241
>AJ224521-1|CAA12029.1| 839|Homo sapiens TRKC protein.
Length = 839
Score = 29.9 bits (64), Expect = 7.1
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 112 NAKFNQIVLRRLFMSRINRPPISVSRLARHMKKTNS*GFDCRGSGDSQNDV 264
NA +Q+ L R+ +S+ + P ISVS + +++ ++ C GSG DV
Sbjct: 191 NADGSQLPLFRMNISQCDLPEISVSHVNLTVREGDNAVITCNGSGSPLPDV 241
>BC117263-1|AAI17264.1| 1069|Homo sapiens SLC24A1 protein protein.
Length = 1069
Score = 29.5 bits (63), Expect = 9.4
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 277 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 456
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 457 AP-GAPRSHTKPYVRTK 504
P G +S++ VR K
Sbjct: 169 TPRGEMKSYSPTQVREK 185
>AF062922-1|AAC77912.1| 1099|Homo sapiens retinal rod Na-Ca+K
exchanger protein.
Length = 1099
Score = 29.5 bits (63), Expect = 9.4
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 277 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 456
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 457 AP-GAPRSHTKPYVRTK 504
P G +S++ VR K
Sbjct: 169 TPRGEMKSYSPTQVREK 185
>AF062921-1|AAC16732.1| 1099|Homo sapiens retinal rod Na-Ca+K
exchanger splice variant protein.
Length = 1099
Score = 29.5 bits (63), Expect = 9.4
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 277 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 456
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 457 AP-GAPRSHTKPYVRTK 504
P G +S++ VR K
Sbjct: 169 TPRGEMKSYSPTQVREK 185
>AF026132-1|AAB97832.1| 1081|Homo sapiens retinal rod Na+/Ca+, K+
exchanger protein.
Length = 1081
Score = 29.5 bits (63), Expect = 9.4
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 277 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 456
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 457 AP-GAPRSHTKPYVRTK 504
P G +S++ VR K
Sbjct: 169 TPRGEMKSYSPTQVREK 185
>AB014602-1|BAA31677.2| 988|Homo sapiens KIAA0702 protein protein.
Length = 988
Score = 29.5 bits (63), Expect = 9.4
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +1
Query: 277 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 456
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 117 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 171
Query: 457 AP-GAPRSHTKPYVRTK 504
P G +S++ VR K
Sbjct: 172 TPRGEMKSYSPTQVREK 188
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,105,951
Number of Sequences: 237096
Number of extensions: 2087893
Number of successful extensions: 4678
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4659
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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