Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30170
         (654 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB014535-1|BAA31610.2|  864|Homo sapiens KIAA0635 protein protein.     37   0.072
AK124538-1|BAC85878.1|  256|Homo sapiens protein ( Homo sapiens ...    32   1.6  
U05237-1|AAA97522.1|  810|Homo sapiens FAC1 protein.                   31   3.6  
AY282495-1|AAP22284.1| 2764|Homo sapiens bromodomain PHD finger ...    31   3.6  
AB032251-1|BAA89208.1| 2781|Homo sapiens bromodomain PHD finger ...    31   3.6  
AF317887-1|AAK01919.1|  589|Homo sapiens monoclonal antibody 3H1...    30   8.3  

>AB014535-1|BAA31610.2|  864|Homo sapiens KIAA0635 protein protein.
          Length = 864

 Score = 36.7 bits (81), Expect = 0.072
 Identities = 47/195 (24%), Positives = 91/195 (46%), Gaps = 4/195 (2%)
 Frame = +3

Query: 6    RTRSSIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIV 185
            +  S + +++   ED+   V+++LSS +EL  + ++ KDI  + + N K +    V V +
Sbjct: 675  KAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDI-MTQQLNSKNLEFERVVVEL 733

Query: 186  EEIKPSLKSDLENVEVPDENEEIRGL*SI*EIPGPRSIKS--TKHRILNTTKMLKK--SF 353
            E +K   +SDL   ++ +E   ++ L S+      +   S  T H      ++LK+  + 
Sbjct: 734  ENVKS--ESDLLKKQLSNERHTVKNLESLLATNRDKEFHSHLTSHEKDTEIQLLKEKLTL 791

Query: 354  LPSKMTLTQRKSLFVKASRKCQTVIFGGGKKPKMSSSEQINELQASLQHFQEIFGAQIPK 533
              SK+T   R++  ++A +  Q        K ++S+     E + ++Q  +   G   P 
Sbjct: 792  SESKLTSQSRENTMLRA-KVAQLQTDYDALKRQISTERY--ERERAIQEMRR-HGLATPP 847

Query: 534  LNETLHFY*TS*HHR 578
            L+ TL     S  HR
Sbjct: 848  LSSTLRSPSHSPEHR 862


>AK124538-1|BAC85878.1|  256|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42547 fis, clone BRACE3004880. ).
          Length = 256

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
 Frame = -3

Query: 196 LISSTITLTGMSMTSFLFARRLLSMSLMVLAWS---MSSCSLDKLSTTFKGLSSASGTLS 26
           L S T++  G+S T+ LFA RL S+++   + S   +S+C L +++ +  GLSS + +  
Sbjct: 118 LSSMTLSACGLSSTT-LFACRLSSVTVSTCSLSSVTLSACGLSRVTLSACGLSSMTPSAC 176

Query: 25  GM 20
           G+
Sbjct: 177 GL 178


>U05237-1|AAA97522.1|  810|Homo sapiens FAC1 protein.
          Length = 810

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 87  QELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVEVPDENEE 251
           +E+    +  +D+ N  R + K  +    + I+E I+   K D++NV+ P+E E+
Sbjct: 386 EEIHRHMDITEDLTNKARGSNKSFLAAANEEILESIRAK-KGDIDNVKSPEETEK 439


>AY282495-1|AAP22284.1| 2764|Homo sapiens bromodomain PHD finger
           transcription factor protein.
          Length = 2764

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 87  QELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVEVPDENEE 251
           +E+    +  +D+ N  R + K  +    + I+E I+   K D++NV+ P+E E+
Sbjct: 386 EEIHRHMDITEDLTNKARGSNKSFLAAANEEILESIRAK-KGDIDNVKSPEETEK 439


>AB032251-1|BAA89208.1| 2781|Homo sapiens bromodomain PHD finger
           transcription factor protein.
          Length = 2781

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 87  QELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVEVPDENEE 251
           +E+    +  +D+ N  R + K  +    + I+E I+   K D++NV+ P+E E+
Sbjct: 386 EEIHRHMDITEDLTNKARGSNKSFLAAANEEILESIRAK-KGDIDNVKSPEETEK 439


>AF317887-1|AAK01919.1|  589|Homo sapiens monoclonal antibody 3H11
           antigen protein.
          Length = 589

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
 Frame = +3

Query: 9   TRSSIPDKVPEAE-DKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIP----- 170
           T   + +K  EAE    L   D    ++EL++    +KD ++ +   +  V++I      
Sbjct: 354 TLDILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVVEIKNCKNQ 413

Query: 171 VKVIVEEI----KPSLKSDLENVEVPDENEEIR 257
           +K+   EI    K   K +L+  + PDENE +R
Sbjct: 414 IKIRDREIEILTKEINKLELKISDFPDENEALR 446


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,298,940
Number of Sequences: 237096
Number of extensions: 1795273
Number of successful extensions: 8830
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8824
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)